AMCG00021757 (khdrbs3,LOC106521499,LOC106531515)


Basic Information

Item Value
gene id AMCG00021757
gene name khdrbs3,LOC106521499,LOC106531515
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28586176 ~ 28591802 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021757
TTTAACTTTGTTGGTAAACTCCTTGGGCCACGTGGAAACTCGTTAAAACGGCTACAGGAAGACACCCTCACAAAGATGTCAATCCTTGGAAAAGGTTCcatgagagaaaaagaaaagGAAGAAGAGCTTCGAAAGAGCGGTGAAGCCAAATACCAGCATCTGAACGAGGACCTCCACGTACTTATTGAAGTGTTTGCTCCTCCAGCAGAAGCGTATGCCAGAATGGGACATGCACTTGAGGAGATCAAAAAGTTTCTCATTCcaGATTACAATGATGAAATCAGACAGGCACAACTTCAGGAGCTCACGTATCTAAATGGAGGGTCTGAAGATGCAGAAGTGCCAGCTGTGAGAGGGAAGACAGTAGCGCGAGGAAGAGGAACACCCGCCCCTGGCCTGCCCAgGAGTCGAGGAGGTGTTGCCCCACCCCAGGCCGTGGTCCCGCGTGGTGCCCCCGCGCCCAGAGGAGCACCACCAGGTAGAGTTCCTGTAACCAGAGGACGAGGCGTACCTGCACAGAGAGCTCGAGGAGCACCCCCCACTACTGGATACAGACCTCCTCCTCCACCGGCGCAGGACACATATGGAGAATAT

Function

symbol description
khdrbs3 Is expressed in brain; eye; and testis. Orthologous to human KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3).

NR:

description
PREDICTED: KH domain-containing, RNA-binding, signal transduction-associated protein 3

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14942 KHDRBS3, SLM2; KH domain-containing, RNA-binding, signal transduction-associated protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021757 True 594 mRNA 0.53 4 28586176 28591802

Neighbor

gene id symbol gene type direction distance location
AMCG00021756 NA coding downstream 347036 28234640 ~ 28239140 (-)
AMCG00021755 NA coding downstream 367461 28215822 ~ 28218715 (-)
AMCG00021747 NA coding downstream 945267 27638582 ~ 27640909 (-)
AMCG00021744 rplp1 coding downstream 999037 27584420 ~ 27587139 (-)
AMCG00021743 NA coding downstream 1145914 27416270 ~ 27440262 (-)
AMCG00021767 NA coding upstream 451696 29043498 ~ 29047472 (-)
AMCG00021771 pqlc1 coding upstream 670650 29262452 ~ 29264433 (-)
AMCG00021770 txnl4a,txnl4a.S,txn4a,LOC107593623,LOC106570226 coding upstream 676612 29268414 ~ 29271589 (-)
AMCG00021774 NA coding upstream 681290 29273092 ~ 29275349 (-)
AMCG00021773 NA coding upstream 689754 29281556 ~ 29285963 (-)
G88201 NA non-coding downstream 318623 28266712 ~ 28267553 (-)
G88191 NA non-coding downstream 453313 28132566 ~ 28132863 (-)
G88190 NA non-coding downstream 482510 28103330 ~ 28103666 (-)
G88157 NA non-coding downstream 949456 27634904 ~ 27636720 (-)
G88154 NA non-coding downstream 954508 27627120 ~ 27631668 (-)
G88226 NA non-coding upstream 106076 28697878 ~ 28698110 (-)
G88228 LOC107575789 non-coding upstream 169394 28761196 ~ 28761972 (-)
G88240 NA non-coding upstream 186491 28778293 ~ 28778685 (-)
G88241 NA non-coding upstream 187541 28779343 ~ 28779710 (-)
G88243 zfat,LOC107723386 non-coding upstream 193364 28785166 ~ 28785661 (-)
AMCG00021723 hsf1 other downstream 1666332 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 1867668 26674078 ~ 26718508 (-)
G87871 NA other downstream 2431801 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 2480785 26091227 ~ 26105391 (-)
G87806 NA other downstream 2678171 25905444 ~ 25908005 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 190000 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 477399 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 1138275 29730077 ~ 29742808 (-)
G88527 NA other upstream 1745781 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 2286046 30877848 ~ 30888588 (-)

Expression


Co-expression Network