AMCG00021770 (txnl4a,txnl4a.S,txn4a,LOC107593623,LOC106570226)


Basic Information

Item Value
gene id AMCG00021770
gene name txnl4a,txnl4a.S,txn4a,LOC107593623,LOC106570226
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29268414 ~ 29271589 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021770
GTATGAGTGACGTATACCACAGTTTGTCGCGTTTTTACATTTCTGCCTCTGGGAAGGTAGCAGGATcaggcacatttgtttttatttttcatcattttaaagtTCGTGAAAAGGGACCgcgaaaatattgtttttaattcatatttgtctttgagtttttcagttttgtcttcttatttggaAATAAGTCTCCCCTTGCCTCAAGATGTCGTATATGTTACCTCATCTCCACAATGGCTGGCAGGTGGACCAGGCCATCCTCTCTGAGGAGGATCGAGTGGTCGTCATCAGGTTTGGCCATGACTGGGATCCTACCTGCATGAAAATGGATGAAGTGTTATATAGTATTGCTGAAAAGGTGAAGAACTTTGCTGTAATTTATTTGGTGGACATCACAGAGGTGCCAGACttcaacaaaatgtatgaattatacGATCCATGCACTGTCATGTTTTTCTTCAGGAATAAGCACATCATGATTGACTTGGGCACTGGTAATAACAACAAGATTAACTGGACCATGGAGGACAAGCAGGAGATGATAGACATTGTGGAGACTGTTTACAGAGGGGCCAGGAAAGGACGTGGTTTAGTGGTGTCTCCCAAAGACTACTCTACCAAGTACCGATACTAAGTCTCTGGTTCTGTGGGGAGTGCCTGTGCCCTTAATGAGAATCAGTCTGTGACATGGACAGAAAAAGCGATGGTCTAGTAACACTGGCAGATCATGGAGCTACGGGCACTATACTTTTCGTTGGTCTATTTAATTATTCTGATGTTACTGGAGGATTTGAACAATTACAATAGTCGAAGTTAATACTTAAGGATAGTAATTTATTTACGTTTCTGTTTTTGGTTATATGAAAAGTCAAGTGCCcgttttatatgcattttaaatcgTATGTGAAGTAAGTGTACAGTTACCCACCCCTCCTTAAActgtttcaatattttgtttgcagaAGTTATCTTGCTGATTTCCTGCAGCAATGACAGTGACATTTTCTAAACCCTAGGAAATAAACTGACCTAAAACTTATCTAAGTTTTTGTTATCATATTTGTTTATGACATAATAAAAAAGAAGTACATTTGTATCACTGCCTTTTATTCCAATCCACCTCCCAGTATCTCAATTGCTCTGTTTAGTGGATTAACTACATGTAGTGTCCCTTGAATCAGAATCTTCCAAGTCATCACCTGTAAAAGATCTGACGTATGCCTGATCAAAGAAAATGATCGTCATGTGGTTCAAACTCCTGACCAAGTC

Function

symbol description
txnl4a Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U5 snRNP; and spliceosomal complex. Is expressed in liver. Human ortholog(s) of this gene implicated in Burn-McKeown syndrome. Orthologous to human TXNL4A (thioredoxin like 4A).

NR:

description
PREDICTED: thioredoxin-like protein 4A

GO:

id name namespace
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K12859 TXNL4A, DIB1; U5 snRNP protein, DIM1 family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021770 True 1269 mRNA 0.39 4 29268414 29271589

Neighbor

gene id symbol gene type direction distance location
AMCG00021771 pqlc1 coding downstream 3981 29262452 ~ 29264433 (-)
AMCG00021767 NA coding downstream 220942 29043498 ~ 29047472 (-)
AMCG00021757 khdrbs3,LOC106521499,LOC106531515 coding downstream 676612 28586176 ~ 28591802 (-)
AMCG00021756 NA coding downstream 1029274 28234640 ~ 28239140 (-)
AMCG00021755 NA coding downstream 1049699 28215822 ~ 28218715 (-)
AMCG00021774 NA coding upstream 1503 29273092 ~ 29275349 (-)
AMCG00021773 NA coding upstream 9967 29281556 ~ 29285963 (-)
AMCG00021775 NA coding upstream 36298 29307887 ~ 29315441 (-)
AMCG00021776 NA coding upstream 46734 29318323 ~ 29321631 (-)
AMCG00021777 pard6g,pard6gb,LOC107731577,LOC105910269,LOC106570232,LOC106588584 coding upstream 56409 29327998 ~ 29332145 (-)
G88245 NA non-coding downstream 437190 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 456449 28811763 ~ 28811965 (-)
G88243 zfat,LOC107723386 non-coding downstream 482753 28785166 ~ 28785661 (-)
G88241 NA non-coding downstream 488704 28779343 ~ 28779710 (-)
G88240 NA non-coding downstream 489729 28778293 ~ 28778685 (-)
G88347 NA non-coding upstream 7772 29279361 ~ 29280873 (-)
G88434 NA non-coding upstream 566929 29838518 ~ 29841539 (-)
G88435 NA non-coding upstream 616856 29888445 ~ 29947540 (-)
G88545 NA non-coding upstream 1153715 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 1254157 30525746 ~ 30562800 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 196654 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 485133 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 2348570 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 2549906 26674078 ~ 26718508 (-)
G87871 NA other downstream 3114039 26152105 ~ 26154375 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 458488 29730077 ~ 29742808 (-)
G88527 NA other upstream 1065994 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 1606259 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 1857994 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 2791796 32063385 ~ 32069464 (-)

Expression


Co-expression Network