AMCG00021779 (LOC108438266,LOC105891906)


Basic Information

Item Value
gene id AMCG00021779
gene name LOC108438266,LOC105891906
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29378575 ~ 29385325 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021779
ATTTATGGTATCTACAAGTGTTTTATACCCATTCTGGAGAAACACTTCACGGTCGTCTACACTGAGGAATTCGCCAGGTGTAAAGAAAGGTTCGCAGACACCATCCAAGCCATCATATTGTGGTGTGCACCTACAGTTGACCGTGACCTGCTGCAGTCTTTGCCCAACCTGAAGAGTTTGTCTCCAATCTTTGCCAGAGACAGTATGATCTacctctttttcttttggtctctgtgttttttctctcctaacaggacagaggaagaggagacgGCTGTGGGAGCCCATTACTGTGAGAAAATAGAGGAACTGCTGCAGAAGTCTGATTTTGTCATGTTGGTGGTGAACCTGTCTcctcagacacacaaactgatAGGAGCGAGGGAGTTGGCCCTGATGAAACCCACTAGCACACTCATTAACATCAGCAGAGGGTTGGTAGTGGACCAGGAAGCGCTTGTAGATGCTCTTCAGAAAGGAACGATTCACGGTGCAGCACTTGATGTCACATACCCTGAACCGCTGCCA
>TU110265
gaactacaaatggtcttggactactttttttttttttatgggggGCGTGTTGTtgccacgaaaaaaaaaaaaaactggcagcAACACGCCCCCAAAATacgaaaaaaaagaaagattagcATGTTATTTCCTGTGGTAAAGCTGTTCTTTCCCGTGTGGCAGCGCTGGCTCGGTGCTGGATTAATCGCGTCTGCTGGCGCAGTGTTGAATATGTTCCGCGCAGCTGCGAAACTGCGAAACTGCAGCTGGGTCAGTTTCACAAGTTTCTGCACGAAATCCCTAAAACTGgAAATGGAAAAGCCTTGCATATTAGTCGCCACACCAGGCATTTATGGTATCTACAAGTGTTTTATACCCATTCTGGAGAAACACTTCACGGTCGTCTACACTGAGGAATTCGCCAGGTGTAAAGAAAGGTTCGCAGACACCATCCAAGCCATCATATTGTGGTGTGCACCTACAGTTGACCGTGACCTGCTGCAGTCTTTGCCCAACCTGAAGGTGGTTGCAAACNNN
>TU110266
gaactacaaatggtcttggactactttttttttttttatgggggGCGTGTTGTtgccacgaaaaaaaaaaaaaactggcagcAACACGCCCCCAAAATacgaaaaaaaagaaagattagcATGTTATTTCCTGTGGTAAAGCTGTTCTTTCCCGTGTGGCAGCGCTGGCTCGGTGCTGGATTAATCGCGTCTGCTGGCGCAGTGTTGAATATGTTCCGCGCAGCTGCGAAACTGCGAAACTGCAGCTGGGTCAGTTTCACAAGTTTCTGCACGAAATCCCTAAAACTGCTCCTCACACAGGTCAGATACTTTGGCTCTATCCAGCCTGGATCATCTTTAACCTCATCATTGGGCAAATACATTCTTTGCTGAACGATTAGACGGATCCTTTGCTGACCCTGATCATGCTGTTGTATATGGAAGATAATttgttccaaataaataaataaagtactaaataaataaaaaaagcatgaaataaatattaatgtatttatctaatttTGTAtctattaatgtttaatatgtattaatttattttgtattttatttatttatgtatttcatattatatgtatgtttttatttatttttaagtgttttcacaaattattctcCATTGTTATGTAGCATGTTGtcacaacgttgtgtgttaaCTGGGACAGCCCCGTACGTGTTTTGTCAGTGTTAAGGACAGCTTCAACGTGGTGTCAAACTAGGACAAAAAACAGTCCTTCTTTGTACCTGAAATGTTTGATGAATCGCTAATGAATGCTAATTAGGAAACTGGCGGTGTTTTTAGGATTGGTTGGATTCCTAAAAACAGTCGCTATTTGAGGCACGTGATGTCACTCAGTTGTTGGGAAGGACTAAATCCACATTTGATGAATCACAAACAGTTCTTAAACCCTTGTTATTCTGTCCGTTAAGATTGTCCATTAAACCGTCACTTTGATGAATAGGGCCCATGGACTGCAGCGTAGGTTGACATTCTGTGGCATTTAGGAATGCAGTGGTCGTGTTTGTGTAGCGTATCTGCgtggctccaccaatgggatcggtgcgattctgcagatctgcgctacaagaacacgACTCATtatctcttttatttttcaatttcaggAAATGGAAAAGCCTTGCATATTAGTCGCCACACCAGGCATTTATGGTATCTACAAGTGTTTTATACCCATTCTGGAGAAACACTTCACGGTCGTCTACACTGAGGAATTCGCCAGGTGTAAAGAAAGGTTCGCAGACACCATCCAAGCCATCATATTGTGGTGTGCACCTACAGTTGACCGTGACCTGCTGCAGTCTTTGCCCAACCTGAAGGTGGTTGCAAACNNN
>TU110267
gaactacaaatggtcttggactactttttttttttttatgggggGCGTGTTGTtgccacgaaaaaaaaaaaaaactggcagcAACACGCCCCCAAAATacgaaaaaaaagaaagattagcATGTTATTTCCTGTGGTAAAGCTGTTCTTTCCCGTGTGGCAGCGCTGGCTCGGTGCTGGATTAATCGCGTCTGCTGGCGCAGTGTTGAATATGTTCCGCGCAGCTGCGAAACTGCGAAACTGCAGCTGGGTCAGTTTCACAAGTTTCTGCACGAAATCCCTAAAACTGCTCCTCACACAGGTCAGATACTTTGGCTCTATCCAGCCTGGATCATCTTTAACCTCATCATTGGGCAAATACATTCTTTGCTGAACGATTAGACGGATCCTTTGCTGACCCTGATCATGCTGTTGTATATGGAAGATAATttgttccaaataaataaataaagAAATGGAAAAGCCTTGCATATTAGTCGCCACACCAGGCATTTATGGTATCTACAAGTGTTTTATACCCATTCTGGAGAAACACTTCACGGTCGTCTACACTGAGGAATTCGCCAGGTGTAAAGAAAGGTTCGCAGACACCATCCAAGCCATCATATTGTGGTGTGCACCTACAGTTGACCGTGACCTGCTGCAGTCTTTGCCCAACCTGAAGGTGGTTGCAAACNNN
>TU110269
aggacagaggaagaggagacgGCTGTGGGAGCCCATTACTGTGAGAAAATAGAGGAACTGCTGCAGAAGTCTGATTTTGTCATGTTGGTGGTGAACCTGTCTcctcagacacacaaactgatAGGAGCGAGGGAGTTGGCCCTGATGAAACCCACTAGCACACTCATTAACATCAGCAGAGGGTTGGTAGTGGACCAGGAAGCGCTTGTAGATGCTCTTCAGAAAGGAACGATTCACGGTGCAGCACTTGATGTCACATACCCTGAACCGCTGCCAAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0051287 NAD binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021779 False 528 mRNA 0.48 3 29382085 29385323
TU110265 False 516 TUCP 0.46 2 29378575 29382273
TU110266 True 1353 lncRNA 0.40 2 29378575 29382273
TU110267 False 678 TUCP 0.44 3 29378575 29382273
TU110269 False 278 lncRNA 0.51 2 29383870 29385325

Neighbor

gene id symbol gene type direction distance location
AMCG00021769 NA coding upstream 155263 29210277 ~ 29223312 (+)
AMCG00021768 NA coding upstream 283314 29076101 ~ 29095261 (+)
AMCG00021766 cpsf1 coding upstream 336634 29025563 ~ 29041941 (+)
AMCG00021765 NA coding upstream 356834 29007396 ~ 29021741 (+)
AMCG00021764 NA coding upstream 372678 28991590 ~ 29005897 (+)
AMCG00021781 NA coding downstream 220815 29606140 ~ 29648683 (+)
AMCG00021782 NA coding downstream 368086 29753411 ~ 29782570 (+)
AMCG00021784 LOC107677448,LOC106606150 coding downstream 403409 29788734 ~ 29804747 (+)
AMCG00021785 gmpr,LOC108425204,LOC108257268,LOC103024228 coding downstream 430165 29815490 ~ 29830397 (+)
AMCG00021790 NA coding downstream 692047 30077372 ~ 30091490 (+)
G88308 NA non-coding upstream 63016 29307879 ~ 29315559 (+)
G88307 NA non-coding upstream 80495 29297837 ~ 29298080 (+)
G88306 NA non-coding upstream 97742 29279177 ~ 29280833 (+)
G88249 NA non-coding upstream 408627 28921629 ~ 28969948 (+)
G88248 LOC101154678 non-coding upstream 475961 28902398 ~ 28902614 (+)
G88403 NA non-coding downstream 339834 29725159 ~ 29725962 (+)
G88440 NA non-coding downstream 589716 29975041 ~ 29978559 (+)
G88450 NA non-coding downstream 661803 30047128 ~ 30048888 (+)
G88454 NA non-coding downstream 752213 30137538 ~ 30139284 (+)
G88452 NA non-coding downstream 756870 30142195 ~ 30219496 (+)
AMCG00021772 NA other upstream 103228 29264827 ~ 29275347 (+)
G88276 NA other upstream 313236 29060887 ~ 29065339 (+)
G88238 NA other upstream 599842 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 1741491 27632915 ~ 27637084 (+)
AMCG00021707 NA other upstream 2809427 26535093 ~ 26569148 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 882077 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 1064632 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 5541228 34926553 ~ 35077090 (+)
G89142 NA other downstream 5825808 35211133 ~ 35263537 (+)
G89299 NA other downstream 6579246 35964571 ~ 35967384 (+)

Expression


Co-expression Network