AMCG00021782


Basic Information

Item Value
gene id AMCG00021782
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29753411 ~ 29782570 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021782
ATGGCAGGAATAATAGAGAgacagggctggagaccctgctgtgctgtaTATGagTACGATGACCGCATGGGCGGCAACAGGAAAGGCCGTGTCCCAAAGAGGAGACGCCTGTATAGTGGGCAGCAGGCCAGGGGCCAGCAGAGGCACCGAGGGGGAGCAAGGGGGCTGGAGCCCAGGGCCAGGCTGGAGGAGGACAGCGGCCAGAACATCGGCttccACTATGAGGGGAACAGGGCAGTGTTCTATGTGCAGGATGCCACCACAGCCCTCGCACTGCGCAAAGTGTCACGGGAAATCACCGACACTGAGGGGTACAAGGTGTCCATCTATATGAAGcacgccccccccccaaccagCGCGCTGAACGACCTAAAGCCGGATGACCAGGAGCACCTCAagggcAGTTATGTTGCTTCGGAGGAGACTCAGAGTAGGATTCTGCGCTTCCTGCAGGAttacTACAGTGTATTCGACTCAGGGCACAGAGAGCCACTCTTGGATGCTTATGACAACAGCGCCAGCTTCTCCCTCAGCACCTCTCAGAACCCCTTCAGGTACCAtaggaCCACACATTACCGCATGCTGAAGCAAACGCCCCTGAACGTGGTGGCCTTCCTGAGCAAGCTGCCCAAGACGCAGCACGACGCCAGCTCCTTCGTGGTGGATGTCAACGCCTGCACTGAGACATTACTGTCCTTCACCGTCAGTGGAGTGTTTAAAGAAGtggaCGGGAAGTGTCAGGACACAATGCGCGCATTCTCTCGTGTGTTCACCACTGTCCCTGCAGCAAACTCTGGgctCCATATTGTGAACGACGAGCTGTTTGTTCGGGACGCGACGACGGAGGAGATCAGACGGGCGTTCGCTACTTCAGCCCCCATGCCGTCCAGCAGCGCTGTGCCCACGCTGACTGCTACGCAGCAGGAGATGCTGTCCATCTTCTCCATGCAGTCGGGCATGAAGCTGGACTGGTCACAGAAGTGTCTGCAGGACAACGAGTGGGATTTCAATAGAGCCGCCCAGATCTTCACCCAACTCAAGgCTCAAGGGACAATCCCAGATGTCGCTTTCAAattATGA

Function

GO:

id name namespace
GO:0051028 mRNA transport biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021782 True 1080 mRNA 0.57 13 29753411 29782570

Neighbor

gene id symbol gene type direction distance location
AMCG00021781 NA coding upstream 104728 29606140 ~ 29648683 (+)
AMCG00021769 NA coding upstream 530099 29210277 ~ 29223312 (+)
AMCG00021768 NA coding upstream 658150 29076101 ~ 29095261 (+)
AMCG00021766 cpsf1 coding upstream 711470 29025563 ~ 29041941 (+)
AMCG00021765 NA coding upstream 731670 29007396 ~ 29021741 (+)
AMCG00021784 LOC107677448,LOC106606150 coding downstream 6164 29788734 ~ 29804747 (+)
AMCG00021785 gmpr,LOC108425204,LOC108257268,LOC103024228 coding downstream 32920 29815490 ~ 29830397 (+)
AMCG00021790 NA coding downstream 294802 30077372 ~ 30091490 (+)
AMCG00021792 NA coding downstream 311299 30093869 ~ 30103130 (+)
AMCG00021791 znf704,LOC107696217,LOC107555575,LOC107702114,LOC107584255 coding downstream 336450 30119020 ~ 30126407 (+)
G88403 NA non-coding upstream 27449 29725159 ~ 29725962 (+)
G88352 NA non-coding upstream 364810 29376521 ~ 29388601 (+)
G88308 NA non-coding upstream 437852 29307879 ~ 29315559 (+)
G88307 NA non-coding upstream 455331 29297837 ~ 29298080 (+)
G88306 NA non-coding upstream 472578 29279177 ~ 29280833 (+)
G88440 NA non-coding downstream 192471 29975041 ~ 29978559 (+)
G88450 NA non-coding downstream 264558 30047128 ~ 30048888 (+)
G88454 NA non-coding downstream 354968 30137538 ~ 30139284 (+)
G88452 NA non-coding downstream 359625 30142195 ~ 30219496 (+)
G88485 NA non-coding downstream 473454 30256024 ~ 30258197 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 368086 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 478064 29264827 ~ 29275347 (+)
G88276 NA other upstream 688072 29060887 ~ 29065339 (+)
G88238 NA other upstream 974678 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 2116327 27632915 ~ 27637084 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 484832 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 667387 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 5143983 34926553 ~ 35077090 (+)
G89142 NA other downstream 5428563 35211133 ~ 35263537 (+)
G89299 NA other downstream 6182001 35964571 ~ 35967384 (+)

Expression


Co-expression Network