AMCG00021783 (dtnbp1b,LOC108272579)


Basic Information

Item Value
gene id AMCG00021783
gene name dtnbp1b,LOC108272579
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29648775 ~ 29662887 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021783
ATGAAGGGCCATTCTCTCATGATAGCGGACCTGGATTCAGAGCATGCCCAGAAGGTGTTAGACATGGAGCATGCTCAGCAGATGAAGCTGAAGGAGCGGCAGAAATTCTTCGAAGAGGCCTTTCAGCAAGACATGGAGCAGTATTTATCCACTGGCTACCTACAGATTGCAGAGAGGAGAGAGCCAATAGGGAGCATGTCGTCGATGGAGGTGAATGTCGATATGCTGGAGCAGATGGACTTAATGGATATGTCTGACCAAGAGGCTCTGGACGTCTTCTTAAACTCAGGGGGAGAAGATAACAGCGTGGCTTCACCGATGCTGGGGCCAGAGATGGATTCGTATCCCACTGAGATCACACTGCAGGTTCCCAGCCAGGCGGAGCTGCGACACAAGCTCTCCTCACTCTCATCCACCTGCACGGACTCGGCCAGCCAGGAGGGGAGCGACTCACCCATCGTGCAGTCGGACGAGGAGGAGGTGCAGGCTGACACCACGCTGGCCGTGCTGCAGGACCACCAGCTCCTCAAAGAGAACTCTGATGACAGCGATTCGCAGGCCGCGTAGACGCTCTTTCTCACAGACGACAacgaaaagaacaaaaataaacaaaacccaacCTTGACTTCTATTAAGGTGTATTGAAATGTGCTTGGAGTGAAAAGAACTCCAtcaaatcgttttttttttttttaattattatttttttaaactcccATGTCCTGTATCTAACTCTTCAGTGCTGTGCTGAAACaccccaaaacaaaatctaaaacaataaaaaaaaactattttttttttttcaaattgttctTTTATGTATACCGAACCACTCACTTGTATCCAGGCTGTCTTCTATCGGAAAGCAACTCCAGTCAAACTGATTTTAGGGCCAGTACTACACTTGGGAGATGGGAGCAACCATCTACATCAAACTTtcaaaataacaggaaatggaGGCTTAATCACTTTGACTTTgtgtaattaactttttaatgtaCTTACTTAAAAAACTCCTGTTATCCAATGTGCTCTGATCTTAACCTTTAAAACACTATACCATGCAAATGGGCAACAAAGTACAAATGCAAACCATGTGTTAGCCATGTGTGTCGATATCCCCGTTCAGCCACTCACATCAGCACGCATCTCACGCTTGACACTTCTGAGTGGCCATGAATGGACCGGTTGTCGATTCGGAAACCTGCCGGTGCCAAGTATGGTCATCGGACATGAATACTCTGTAGGTCACATGTCCGTTtccaatgtaaacaaatcagccGTGATGATTTATCAGTAGgaaaattgtttaatatttaatggaaaatacTGGGCAGTATATCCAGTATTTAAGGTAAATTATCACCTGCCACATCAGGCATTAAATCGAGCAAAGGCGGCTGCTTGAACTTGCCATCTGTGTCAGGCGGTCCCTTATGTCGAACCATGGTAAATACAGTGCCTATAAGAAGTATTCACTTTACATGTTGTAGTTACATCGTGaaattgttgcatttaaatcatttttccctttgatttaaA

Function

symbol description
dtnbp1b Predicted to be involved in several processes, including anterograde synaptic vesicle transport; platelet dense granule organization; and regulation of synaptic vesicle exocytosis. Predicted to be located in cytoplasm. Predicted to be part of BLOC-1 complex. Predicted to be active in neuron projection; plasma membrane; and synaptic vesicle membrane. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome 7 and schizophrenia. Orthologous to human DTNBP1 (dystrobrevin binding protein 1).

NR:

description
dystrobrevin binding protein 1b

GO:

id name namespace
GO:0048490 anterograde synaptic vesicle transport biological_process
GO:0031175 neuron projection development biological_process
GO:0008089 anterograde axonal transport biological_process
GO:0005768 endosome cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component

KEGG:

id description
K20189 DTNBP1, BLOC1S8; dysbindin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021783 True 1542 mRNA 0.44 4 29648775 29662887

Neighbor

gene id symbol gene type direction distance location
AMCG00021780 NA coding downstream 246070 29386827 ~ 29402705 (-)
AMCG00021778 pard6g coding downstream 274106 29365896 ~ 29374669 (-)
AMCG00021777 pard6g,pard6gb,LOC107731577,LOC105910269,LOC106570232,LOC106588584 coding downstream 316630 29327998 ~ 29332145 (-)
AMCG00021776 NA coding downstream 327144 29318323 ~ 29321631 (-)
AMCG00021775 NA coding downstream 333334 29307887 ~ 29315441 (-)
AMCG00021787 NA coding upstream 179477 29842364 ~ 29846378 (-)
AMCG00021786 LOC106597666 coding upstream 312099 29974986 ~ 29986193 (-)
AMCG00021789 LOC105890378 coding upstream 379992 30042879 ~ 30045102 (-)
AMCG00021788 NA coding upstream 384443 30047330 ~ 30048871 (-)
AMCG00021793 NA coding upstream 479335 30142222 ~ 30158707 (-)
G88347 NA non-coding downstream 367902 29279361 ~ 29280873 (-)
G88245 NA non-coding downstream 817551 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 836810 28811763 ~ 28811965 (-)
G88243 zfat,LOC107723386 non-coding downstream 863114 28785166 ~ 28785661 (-)
G88241 NA non-coding downstream 869065 28779343 ~ 28779710 (-)
G88434 NA non-coding upstream 175631 29838518 ~ 29841539 (-)
G88435 NA non-coding upstream 225558 29888445 ~ 29947540 (-)
G88545 NA non-coding upstream 762417 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 862859 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 1298816 30961703 ~ 30962096 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 577015 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 865494 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 2728931 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 2930267 26674078 ~ 26718508 (-)
G87871 NA other downstream 3494400 26152105 ~ 26154375 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 67190 29730077 ~ 29742808 (-)
G88527 NA other upstream 674696 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 1214961 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 1466696 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 2400498 32063385 ~ 32069464 (-)

Expression


Co-expression Network