AMCG00021787


Basic Information

Item Value
gene id AMCG00021787
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29842364 ~ 29846378 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021787
GATTCCTGGAGCAGTTGTGGAGTCTTTGGGGCAGTGGGAAATGATTCCTCATGAAGTCCATGGATCACTTTCTGAGAGCAGGCGTGACTTTCCAAGCCTTAGACTGAGATCCATGCTGGTCAGACACTGAAGAAAGCCCTCCAGCACAGATAACCAGCGGGTGGGAGGAACCCCgtacagagagcgagagagagagaagaaacagaaagaaacagagagaaagagggagagaaaacagagaaagagaacaaTAGAGCCAACTGCAGAACCATGAAGTCCAACCAGGAACGTAGCAATGAATGCCTTCCGCCTAAAAAGCGAGAAATCCCGGCAAGTAACCTGCCCTCCGATGAGAAGCCTGTAGTTGTGGCCCCTGCTAGTGAGAGCCAGCGAGGAGAGAACCTAACTTGGCTTGCTAACGTGGCCAGCAGACAAAACAGCACTGGGCGGCACAGCAGCATGCCATCTGAAGTAGGTTTGACGCAGGAAAGCTCTGTATACAAGCAGCTCCCGACCACGGTGGAGTATTTGTCCTCATCCAGAGTCTCAAAGCCGGGGGCCACTGTCACGACTCTTCCTGCAGCAGTCTACCCACCCCTCTCACAGCCAGGCGGGACCATCCAGTACACCCAGTTACCGCCAAATCTCCAGTTCACCTACACAGGGCCGTACACTGGCTACATCCCCTCACAGCTCATCTCCCCTACTGCCACTACAGCACCCACACCATCTTCCCAGCGCACCCATTTGGAGGCCTACACAGCCGCTGTGATCTCTCAGGCCTCCAAAGTCGACCAGCACCACCAGTTAGGCCGGTCACCTGGACTGGTAGCTGCCGGGGGTACCCCTCCACCGCCCCCTTCTGTCCAGCCGACCAATCAGTACGTCCAGATTGCCAGCTCCCCTTTGAGCGTCTCCTCTCCTCCTACCCACCTCCCACTGCACCTCCACTCCCATCAGGCTGTCATCCCTCATGCCTTGACCCTCGGCGGCCCCCCACAGGTGGTGGTCCAATATGCAGACGGGCCTTCGGCGAAGAAAGAGGACGGCCGGACGAGAGAGATGCTGAATGGTGAGCTGGAGAAGGGACGGCGCTATGGCCTGTCCCCTGAGATGGCCAAGGCCAGCAGTGGTGCTAAAGGAGCCTCCAGCCAGCagcaccatcaccaccaccaccagcagcaACAGCACCACTATGAGGCCCGGCACGTCATGCTCCCTCCCGACTACAGCACACATGAAACCTCAGGGCTACGGACCTCACTGATGCTGGTGCCCAACAGCCACGCGACCAGCAGTGCCGACTTAGAGATGACCAGGGAGAAATCACCATCCTCCGGCAGCCACAACGAGAAGGCAGGAGGCCTCTGCATGGGGAAGCCTGTGTCCAGGGCTTCCTCGTTCACCTTCTCTTCCTCGCAGCTTGGTGCGGACAGTTTGAAAGCGGCAGTCaccactctctctcctcacacCGTTATCCACACCACTCACAATGCCACCGAGCAGCTCTCCCTGGGCCTCCCTGCTACCAATTTCTACCCCACCACCGCCCAGCCGCCCATCATCGGCTACATCACAGGAAGTGGGCAGCAGCAGACCTCCGTCGGGTACCATACTAACCTGCCCCAGCACTTGGTCATTCCCGGGAACCAGCCCTTGCTCATCCCTGTGAGCAGCAGCGGTGGGGAGCTGGAATCCGGCCATTCAATCGTCACGTCGTCCCAGCAGTTCGCAGCAGTGCCTCACACCTTTGTTGCCACGACAGTCCCTAAGTGTGAGCCTTTCGTGTCTAGCGAGCCACAGTCCCCATCCACTTACCACACTGCTGCTGTGGTGCAGGCCCAGCTCCACTTACCCATAGTCCCTGCTAGTGCCCCTGCTAACGTACTGCCTCCTCCCCCagcctcctcctctccttcactgcccCCCTACTTCATGAAGGGCTCTATTATCCAACTGGCAGACGGTGAGCTCAAAAGAGTGGAGGACCTTAAGACCGAGGACTTCATCCAGAGTGCGGAGATCAGCAACGACCTGAAGATCGACTCCAGCACAGTAGAGCGGATCGAGGGCAGCCAGACACCCAACTTTGCCATCATCCAGTTTGCGGTTGGAGAGCATCGAGCTCAGGTAAGCGTGGAGGTTTTAGTGGAGTACCCCTTCTTCGTTTTCGGCCAGGGCTGGTCCTCCTGCTGCCCAGAGAGGACCACCCAACTGTTTGAGCTGGCCTGCGCGAAGCTGTCCGTGGGCGATGTGTGCATCTCGCTCACCCTGAAGAACCTGAGGAACGGCTCCCTGAAGAAGAGCCAGGGCCCGGACGGCAGCAGCGGGCTCCTGCTGAAATCCCCCAAAGGAGAGGGGCTGTACAGTGGGCGGGGCCGCTACATTGAGCAGGAGAATGGACTGGGGCAGCGGGCCGGCGGGGCGGGCACCATCGGTCCGCAGGCCGTCTCTGAGAATGGGGAACTGAAGTTTCTGGACAAGACCCTTCCTGACACCTGCAGGCCCCTGCCCCCTAAAACAGAAGCCGGCAGCAAGCCAACGACAAGGAAGAGAAGGTGGTCAGCCCCAGAGGGACGCAAAGTGGAGAAAACGGAAGAGGAGCCTCCATTGACTCTGCCCAAGCCCTCTTTTATCCCTCAGGAGGTTAAAATCTGCATCGAAGGCAGGTCGAATATAGGCAAGTGAAGGCTAATGGGGGACTTTTTATAATGTGGAAGAAAATAACTTCCCTtcataacgtttttttttttagtttttcctttgttATCTATCCAGATTACTGTACTGTAGGCTAAATAACCCAGTATTTACATTTATCATCCTACTTTAGGTTCATGTTATAACCTTGTAATAGTTGCATTTGGTATTACACAGGCAATTGGCGCAGTTGTTTGTTCCACATTCTTGGGAAGTTATGAGAgggaatatatatgtgtgtctgtatgt

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K23616 ATXN1_1L; ataxin 1/1L

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021787 True 2949 mRNA 0.56 2 29842364 29846378

Neighbor

gene id symbol gene type direction distance location
AMCG00021783 dtnbp1b,LOC108272579 coding downstream 179477 29648775 ~ 29662887 (-)
AMCG00021780 NA coding downstream 439659 29386827 ~ 29402705 (-)
AMCG00021778 pard6g coding downstream 467695 29365896 ~ 29374669 (-)
AMCG00021777 pard6g,pard6gb,LOC107731577,LOC105910269,LOC106570232,LOC106588584 coding downstream 510219 29327998 ~ 29332145 (-)
AMCG00021776 NA coding downstream 520733 29318323 ~ 29321631 (-)
AMCG00021786 LOC106597666 coding upstream 128608 29974986 ~ 29986193 (-)
AMCG00021789 LOC105890378 coding upstream 196501 30042879 ~ 30045102 (-)
AMCG00021788 NA coding upstream 200952 30047330 ~ 30048871 (-)
AMCG00021793 NA coding upstream 295844 30142222 ~ 30158707 (-)
AMCG00021796 LOC105009370,LOC106588819,LOC100696657,LOC107596629,LOC102210154,LOC107685565 coding upstream 409653 30256031 ~ 30265454 (-)
G88434 NA non-coding downstream 825 29838518 ~ 29841539 (-)
G88347 NA non-coding downstream 561491 29279361 ~ 29280873 (-)
G88245 NA non-coding downstream 1011140 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 1030399 28811763 ~ 28811965 (-)
G88243 zfat,LOC107723386 non-coding downstream 1056703 28785166 ~ 28785661 (-)
G88435 NA non-coding upstream 42067 29888445 ~ 29947540 (-)
G88545 NA non-coding upstream 578926 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 679368 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 1115325 30961703 ~ 30962096 (-)
G88736 NA non-coding upstream 1952374 31798752 ~ 31836239 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 99556 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 770604 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 1059083 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 2922520 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 3123856 26674078 ~ 26718508 (-)
G88527 NA other upstream 491205 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 1031470 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 1283205 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 2217007 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 4413626 34260004 ~ 34356907 (-)

Expression


Co-expression Network