AMCG00021788


Basic Information

Item Value
gene id AMCG00021788
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30047330 ~ 30048871 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021788
GAAAATGGCTGCGTCCAAGGGGACCCTGGTGCTGAAAGCTGTGAAGAAAGTGTTTGTGCAGTTCTGTCCTTTCGAAGCTAACGTGCGCTCCACAAGGGAGTTTCTTGCTATGGTGGGGACCGAAAAGGCCAGGTCAACAAATGCCAACTGTGAATTTATAACAGATGTGAAACACGACCGATCAGATCCAGTCATTGACATTACCTTTGCTGATGGAGAGAGACTTGTCATGAAAGGAGCCAACCTAACGAGTAAAGAGATGTTTTCCACGCTTCAGGCTCTGTGCATAGCAAAGGACCCGCAAGCAAAAGAGGCAGCAAAGAAGTAGAAGGCGTTCcaactgatttatttatgtgtatataaaacaatgtgttaatattttgtttgaataaaaaaaggac

Function

GO: NA

KEGG:

id description
K17434 MRPL53; large subunit ribosomal protein L53

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021788 True 401 mRNA 0.44 3 30047330 30048871

Neighbor

gene id symbol gene type direction distance location
AMCG00021789 LOC105890378 coding downstream 2228 30042879 ~ 30045102 (-)
AMCG00021786 LOC106597666 coding downstream 61137 29974986 ~ 29986193 (-)
AMCG00021787 NA coding downstream 200952 29842364 ~ 29846378 (-)
AMCG00021783 dtnbp1b,LOC108272579 coding downstream 384443 29648775 ~ 29662887 (-)
AMCG00021780 NA coding downstream 644625 29386827 ~ 29402705 (-)
AMCG00021793 NA coding upstream 93351 30142222 ~ 30158707 (-)
AMCG00021796 LOC105009370,LOC106588819,LOC100696657,LOC107596629,LOC102210154,LOC107685565 coding upstream 207160 30256031 ~ 30265454 (-)
AMCG00021797 LOC106570559,LOC105012503,LOC102295214 coding upstream 235801 30284672 ~ 30285136 (-)
AMCG00021801 LOC107743838 coding upstream 333089 30381960 ~ 30386817 (-)
AMCG00021805 acot13,LOC102778390 coding upstream 345508 30394379 ~ 30395918 (-)
G88435 NA non-coding downstream 99790 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 205791 29838518 ~ 29841539 (-)
G88347 NA non-coding downstream 766457 29279361 ~ 29280873 (-)
G88245 NA non-coding downstream 1216106 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 1235365 28811763 ~ 28811965 (-)
G88545 NA non-coding upstream 376433 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 476875 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 912832 30961703 ~ 30962096 (-)
G88736 NA non-coding upstream 1749881 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 1810538 31859409 ~ 31859833 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 304522 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 975570 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 1264049 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 3127486 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 3328822 26674078 ~ 26718508 (-)
G88527 NA other upstream 288712 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 828977 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 1080712 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 2014514 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 4211133 34260004 ~ 34356907 (-)

Expression


Co-expression Network