AMCG00021789 (LOC105890378)


Basic Information

Item Value
gene id AMCG00021789
gene name LOC105890378
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30042879 ~ 30045102 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021789
CATCTTCCGCAGATCATCAGCCACCAATTAGCGCCTGCATCAGCCAAGAAAaccacacagtgacacaatggTGGACAAATTTGTAGGAACATGGAAAATGATCCATAGTGATAACTTCGACGATTACATGAAGGCTCTGGGTGTGGGCTTTGCCACCCGGCAGATGGGCAACATGGCCAAACCCAATCTGGTATTCAGCGTGGAAGGGGACGTGATTTCTATCAAATCCCAGAGCGCTTTCAAGACCACCGAGGTTAAATTCAAACTGGGGGAGGAGTTTGAGGAGACCACCGCCGACGACAGAAAGACCAAGACCAAAGTTACTATGGAAAACGGCAAACTTGTGCAGAAGCAGTCGTGGGACGGCAAGCAGACGACACTAGAAAGAGAAGTGAAAGATGGAAAATTGATAGTGAAATGCACCATGGGGAATGTTGTGGCCGTAAGGACATACGAGAAAGAAGCTTAATGCTATTCAGCTCCCGAGGAGGCTGGATTTTGAAGACACCCAGCTCAGTTCAATGAGCGAAAGGCTAATATACTGCTTGTTTCCTGCTCATTTTTGTAACACCAAAGCCAATTGACATTGCACACTTTTTTTGAGAAATGATGCA

Function

NR:

description
PREDICTED: fatty acid-binding protein, heart-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K08753 FABP4, aP2; fatty acid-binding protein 4, adipocyte

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021789 True 614 mRNA 0.47 4 30042879 30045102

Neighbor

gene id symbol gene type direction distance location
AMCG00021786 LOC106597666 coding downstream 56686 29974986 ~ 29986193 (-)
AMCG00021787 NA coding downstream 196501 29842364 ~ 29846378 (-)
AMCG00021783 dtnbp1b,LOC108272579 coding downstream 379992 29648775 ~ 29662887 (-)
AMCG00021780 NA coding downstream 640174 29386827 ~ 29402705 (-)
AMCG00021778 pard6g coding downstream 668210 29365896 ~ 29374669 (-)
AMCG00021788 NA coding upstream 2228 30047330 ~ 30048871 (-)
AMCG00021793 NA coding upstream 97120 30142222 ~ 30158707 (-)
AMCG00021796 LOC105009370,LOC106588819,LOC100696657,LOC107596629,LOC102210154,LOC107685565 coding upstream 210929 30256031 ~ 30265454 (-)
AMCG00021797 LOC106570559,LOC105012503,LOC102295214 coding upstream 239570 30284672 ~ 30285136 (-)
AMCG00021801 LOC107743838 coding upstream 336858 30381960 ~ 30386817 (-)
G88435 NA non-coding downstream 95339 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 201340 29838518 ~ 29841539 (-)
G88347 NA non-coding downstream 762006 29279361 ~ 29280873 (-)
G88245 NA non-coding downstream 1211655 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 1230914 28811763 ~ 28811965 (-)
G88545 NA non-coding upstream 380202 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 480644 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 916601 30961703 ~ 30962096 (-)
G88736 NA non-coding upstream 1753650 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 1814307 31859409 ~ 31859833 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 300071 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 971119 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 1259598 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 3123035 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 3324371 26674078 ~ 26718508 (-)
G88527 NA other upstream 292481 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 832746 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 1084481 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 2018283 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 4214902 34260004 ~ 34356907 (-)

Expression


Co-expression Network