AMCG00021792


Basic Information

Item Value
gene id AMCG00021792
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30093869 ~ 30103130 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021792
ATGCATTCGCGGCGGCTGGTCAAGCGCTCTATCCTCGGGAGCCGCGTCTGTGCGCCGAGCCCGGCGGGGGACGGGGCGCTGCTGCCCGGGGTGGTCCAAGCTGTCAAACAGGAGAGCCGGGATGCCGCGACCGGAGCCCGCCGGAGTGTGTACACGGTGCTGATGCAAGACGGGAGCTTGCGAGAATACCCCGAGGATGACATTATCAATGCCTGCAATGGCCGGGATCTCGCCACTGTGGGCCAGCAGGAGCAGAAGGGCGATGGGCCAGAGCAGCAGGAGGAACTCCGCACACAGGACGCCAAAAAGAGCAGCCGGGCCCCGGAGACTGACAAGGAGCCTCCTCGTTCGGTGTCCCTACTGGAGCAGAAGCGCAAAGTGGTTTCATCCAGCATCGACGTCCCCCATGCCAGtttTTGGGATCTTGGAATTTTATCCAACCATTTCATTAAGGAAGCAGAGAGTCAACCTTAACGACATGGATGGATTATTTGTTCCTGACTCTTGACTCTTGATGTTTAAATCACTGTCTCTTCttaataaaaaattaacaacaacatcTGGAAAATTggatatgtaaaatgttttaggaATTTGGAGCCACATAGTAAGCTAAGtctatttagatttttctctaCTTGGGCTTCAGCTGTATCCGTTTTAATGAGGACACTGAAAATGATAAAGAAATGCTAAATATTGCAAAGATATGAAACTGTAGATAACTGGCCAAGAAATGCCCCAGACATGTATTCTATACATTCAATAATGGGATAAAGAACCTCAAATTATCTAGTGAAACCAACATAAATTAGAAGTCATGAGAAAGATCTGCTATAAAGGTAAAGccactgacactctgacactATACTACCttataaattgatattttacagaagcttaatattgatatatttaagcTTCCATGCTTTCTAATGTGGCTCATTAAAACCATGACCagcttcagaaatgtattgtgtGATTATGAGATGATTATCCCAGGATCTTGTTTTTGCTAGTTATCTTATGATCACAGGTATTATTAATCTCGATCTCGATTATTATCATTCCATTATTGCTTGATCACAATATAAATTCTCTCAATCTTGAGATAACGAagccctttttttattttgtcatggcCTCAATGAGGCACCGTAGTTATCAAAAAGGAAGCACATTTTGAAAGAATGGAATTGTATCATGTCTACAGATAGAAAATACTAGCCTTATTGAGATGGGtatgtgaaatatgtattttgaaacacaCATCGCAAACATTAGGCCTTGttgttaaattaaacttaaGCGGTTTAACATAAAGCCTCTTTAttgagaaaacaaactgaaataccaaaattgatttattttatgtctgtCTTTTGGGCATTTATTGAAAATCCATTAGGtaaatgcagatgttttttcAGCCATGTGAggaaagaatatattttttgagtTAACTGCAGGATCTTTGTATATGACTATTGACATTATATTTTAGataacttctctctcttcacagaCTTTCTGTTTGAGGAGGTTTTTTGATTTGATCATGCAATTTTATTGAGTTCATGTTTGAGGGTTTGCAATCATTGCAGTTGAATTCAAGTGAACAGGCTTCTGAagtaaaacagaataaaaatgctttatagTAACAGATTGATACATTCACAACATAGTTGGTATAAAATGATCATTGTAGTCTATTCTTTAATCTTtctctttttgctttttttgtttttgttgctctGTTTGTCATTGAACTGTGATGTCGAATTGTCTTGGTCTTTGGTCACTTTATAGTTTATggaaagtgggggaaaaaaaagaatgtatgCAATGACTAATGATAATGCAATTATATGATCTGTAGTGCAAATGGGGATTTTGATTGGATAATCACTTTCACTTCATGAATATTCAATTATCATGTTAATGTTCATAATGGGttatataataatgatgaatgATGTAATCATGTTTACGGCTATGCTGACACTCTTGAGGATACCTTAATTAtgtatacaatttatttgaaagcaaattgtttgttattgtgtttggAAAATGCAACAGTGATAATGCCTCTGAGCCAGTTACTTATGTTAATGTGTAacataaaaaccaaaaaaatctaTAACCTTGTCAGAAATAAACGTGTTTCTCAGTACTGAGTCGTCAACAACAGCTCCCATCTCCATTGTAAATCAACTAAAGACTTATTGggaaagtgtttatttaaattagggAAAGATAAAACTGCACCATCATCAGGGTTCCAAAATACAGAAGACTCGCATAATGGCATAAACTTGTGAACAGCTGCCAGTGAGAATCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021792 True 2346 mRNA 0.38 3 30093869 30103130

Neighbor

gene id symbol gene type direction distance location
AMCG00021790 NA coding upstream 2379 30077372 ~ 30091490 (+)
AMCG00021785 gmpr,LOC108425204,LOC108257268,LOC103024228 coding upstream 263472 29815490 ~ 29830397 (+)
AMCG00021784 LOC107677448,LOC106606150 coding upstream 289122 29788734 ~ 29804747 (+)
AMCG00021782 NA coding upstream 311299 29753411 ~ 29782570 (+)
AMCG00021781 NA coding upstream 445186 29606140 ~ 29648683 (+)
AMCG00021791 znf704,LOC107696217,LOC107555575,LOC107702114,LOC107584255 coding downstream 15890 30119020 ~ 30126407 (+)
AMCG00021794 NA coding downstream 82190 30185320 ~ 30200518 (+)
AMCG00021795 hey1,LOC104947062,LOC107584259,LOC102780967 coding downstream 146953 30250083 ~ 30254353 (+)
AMCG00021799 si:dkeyp-120h9.1,LOC106570559,LOC105012503 coding downstream 188111 30291241 ~ 30299913 (+)
AMCG00021800 NA coding downstream 244694 30347824 ~ 30375199 (+)
G88450 NA non-coding upstream 44981 30047128 ~ 30048888 (+)
G88440 NA non-coding upstream 115310 29975041 ~ 29978559 (+)
G88403 NA non-coding upstream 367907 29725159 ~ 29725962 (+)
G88352 NA non-coding upstream 705268 29376521 ~ 29388601 (+)
G88308 NA non-coding upstream 778310 29307879 ~ 29315559 (+)
G88454 NA non-coding downstream 34408 30137538 ~ 30139284 (+)
G88452 NA non-coding downstream 39065 30142195 ~ 30219496 (+)
G88485 NA non-coding downstream 152894 30256024 ~ 30258197 (+)
G88609 NA non-coding downstream 624154 30727284 ~ 30730868 (+)
G88655 NA non-coding downstream 944673 31047803 ~ 31048529 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 708544 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 818522 29264827 ~ 29275347 (+)
G88276 NA other upstream 1028530 29060887 ~ 29065339 (+)
G88238 NA other upstream 1315136 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 2456785 27632915 ~ 27637084 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 164272 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 346827 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 4823423 34926553 ~ 35077090 (+)
G89142 NA other downstream 5108003 35211133 ~ 35263537 (+)
G89299 NA other downstream 5861441 35964571 ~ 35967384 (+)

Expression


Co-expression Network