AMCG00021793


Basic Information

Item Value
gene id AMCG00021793
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30142222 ~ 30158707 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021793
ATGGATCTTCAGGAAGAATACAAGTCGCCTTTTGATTTTGAGCGTGGCGTCAACGCAAATTACCTGTACCTCTCCCCCAGCCTCAGTGTCACCCCCCCTGGGTCACCGGGGCTTACGGCGAAAGGTATATCGAGGCCAGAGACAATACCGGAGGTTGGAGAAGATGCCGCGTCCACTGTTAGCCTATCAGCGACTTCTTTGACAGAGGAGGAGCAAGAAGAACTCCGAAATGAGCTTGCCAAGGTAGAGGATGAAATTCAGACGCTTTCTCAAGTGTTGGCAGCTAAAGAGAGGCATGTGGCGGAAATGAAAAGGAAGCTGGGCATCACTCCACTCAACGAGCTCAAGCAGAACATCACCAAGGGCTGGCAGGATGTTACCACATCGACGGCGTACGTGCCATCTATATACAAGAGGACATCTGAAACTCTGAGTCAGGCTGGGCAGAAGGCCACTGCAGCTTTTTCTACTGTGGGCTCTGCCATCAGCAAAAAGCTGGAGGATGTAAGGAATTCCCCGACGTTCAAGTCATTTGAAGAGAAAGTTGAAACTCTAAAGACTAAGGTCTCCAACCAGCCTTCAACTGGGGATTTTGATGAGGTTTTGAATTCCACTGCCAGCGCCAGTGCCATGGACCCCAAGCCTGAAGAGGCTCCTGCGGACCGCCAGGGTGCTCGCTGATTtacacccccaccccatcccatcccatcccatcccatccccaCATCCCTTTGCCTGTTCACCCACTGCCAAGTGTGTCTGCCAACCAAGACAGTGCGCCCGCTGCTTTACCTCTCCTCCTCTAGTCCTACTGTAAACGCTTCAGTCGAAGCATCTGTCCTGCTGTCTTGactgggggaagaaaaagagaacCCAGTCTCTGTATAATATTAACTGCTTGGTTTGAAATTAAACACTGAATAACACTTGGGAGAAACTAAAGAGAAACAGAacactttaatttgtaatttgtaaaataatttgatttgccTTTTCTTgttgcggggggggggggtgcttagtaattacatattacaatatacaaatatgaaagaaaataacaaagaagTAGACAAGAAGCATATTTGTAACTGAAAGTGGGAGCCACCAAAAAAAGGAGAATCCCCTGAACTTCTTAATCTTCTTTGGAATTTCCACCAATGAACCCCCCCACACCCaataagaaactaaacaaaacagacagtCTTCTTATGCATTATACAACTGTCTcgtgcatttgttgtttttcattttaagctGTAAGGCACTTGACATTGAATCTTTTATTCAGTTTCTTTGGTGCCTACAAAATGAAAAGTGGTCGAAGTCACTGTATTCTTCTCTCCCCTTCCTCAGCTGGAGGTCTTATCTGAAGGAGGGATTTAACGTTGGCATAGAACTAAGCACACACCAACAAACTAATTCAGATCTTAGTCAAGGAGCTGTAAAGAATGGCTCCCCTGTCCTGGCCCCAGAGTGCTGCAGTATCTTCAGGTTATTCCACCTGCGCCCTCAACTAATTATTGACTTTTTAGAACCAATTTAACTACTTCCTTTGAGAGCTAGAAAACCTGTTGGACTGTGACCCCTCCAGGACTAAGATGGTGGATCCCCTACCCTAAACTGTAGATGTATTATTGCTGGTTTAGCAATGCTTTCATCTCATATTTAGTTAAGGACActgtaaaacaattacaaaagcaCAGGATgttacatttacatgttttacttgAGTTGATTCAAACTTTTCTGTGACCATGTTTGCTTTTATGATTTACgttcaaaagaaaaactgtaacgCTGACAATCACTTTAGATCTGATAGAAAAGGCCTGAATTACTGCAGACTATTGTTATTAACAGCTCTCCACTCCCCCATCCCACCCACAATATTGTCATGCTTAGTATTCTGTTCCAATTGCTTCTTTCTAGGTTTGCTCcacttgttttttgtgtacGTCTTCAATCTGTGCTGTAGTTATTAAATATTGTCAGACAGCTTGTAAATCACATGTTGTATGTTAATGATAGAAACCAGCTTCTGGACTATTCATTTCAACTTCGGGCCCAATGCACGccttgatattttgttttggttagtATCCAAATAGTTAGTTTGAGAAATCTACCACTATGCTTCTTTTATAAaagcttatttatatttaacagctGATGTGGGAGCCGTTTCTATAACAACAAAGCAGCAATCTTCATACCAGAAATAAGATGAACATACAAGAATGCATTTTTATCTCTGGGTTTGCTCCAAAATGCAAAAGTGAGGGTTCATATAGGCATTTCTTTCAGATTATTGTCTACAGTGAGATTTCCATGTTACTAGCGAACCAGATTCAAGCAAATTGCTATTACTTCTTTTGGTTAATGTTGATATTTCACACGGTTTCTGATTTAGGGGATGGGAGAGTGCTTTTCCATGTTGTAAGCCTAGAACTGTCAGTCATAGAAGAGGATGTAGGAGGAACAGCAAACTTGGTCGTATTTTGCTGGCAGAcgagttgttttgttttgattgtttttttaattaacgcTGACAAATCTGATACTGCAAAGCAAAATGTCTGTTAAAGCAGCCGGATAAATTATGAATGATAATATTCAATAATCTGGAGTAAAATTTACACTGGAATACCAGATTtgaggtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactgtggcaATTGTTTCCACTGTTTCGcttcttaaaatgtttcagttcgATAATAGGCAGACATTGGTATATTAATGCTGTCACTAAGAAGGTCTGCCAAAGCCTTGTCAAATTTAAAGCAGTGTTGCCAGTTGTTTCTGCCTACTGCTTGTGCCAGTGCTCAGCAGAACCATCTGGTCCACATGCACAGCTCTACTGTAGTTGCCACTGTAAGCAAGTGCTTAAATTGAATCCTACAATTAGGTAGGTACTTATAATGAATAGTATGCTAATTGCCTGCATAACCCAGCCCAGCTTTTCAGGGGGCGGGCAAGAATTCAGTGTGCTTTCTGTGCGTAAAACTATTGATCTAACTTGGGTTTTCAATGTTTGGGttcgttttttatttaactAGAAAAGTATACATATTTCTAACAGTTAAGGTAATCGGATATCACATGTTCGTCTAGTTCAGTTTTATCCGAGTTTATGTACCACAAACCTGCCCAGATTACTAGAACAAATTGTATTGAGTGAGACACGCATGGTCTCCTCACACAAAATCCACTTTAATTGGCTGTCAAAGGTTTAATATTGTTCTGTGCAAGTTGGTTTTATTGCACTGTATGTATGAACATGATATGGGACTGTCCACTTGCAAAGCACAAGGATGTTCTTCATCAGATCCTTGGGGGCTGTGCTTTCCTGCTTGCTTTAGTGAACACAGTGGTAGGTTAGGGTATCACACTGGCATCCTGATGCCTTGTTCAACTGTGCTTAGGATATCAGCAGTAAGGGCAGtaataaaaatggttttaatccTGATAAGAGGTTTCATAATCGTATAATGCCTAAAACTTACCCCCCCATCTGTCTAAGGAGGCCGAGCAGATATCCGTGTTAGAGGCTCGGATCACGGGGAGTAAGCTCCTGTATACTGTGAGGCACTGGGACTGGAGAGAATGAACACTTGCTTTGCTGTGCAGTTCATTTGTGGAGATTTTTCATTTACTATAAACCCAAACTGAATGTTCAAGGCTTCCCCAGAAATGTGCACCTAACCCAAAACAAAATTGGAAATCtgtaaaaatgtagttttgGTTTCAGTGTTGGCCCACTGTTCAGGgtttgtttaaactgttttaacagACACTTTCCGTCTATATGATATACTTTATGTTCTGTTGTTTCCATTGGTTTTCTTGTGGCTGGTCTCCAGTTCAATATGTGAAACCACAAAggtttaaatgaatgtaaagcCTGTTTCCAAACACTGAATGTTTCTGCTTTATGTAGAgtttaagttgtttttgtttgtttttaaatgctaaaaaaatgtttgcagcaTTTGAGAGGATTAATGCTTTGTTAGCACAATCACctgatttattgtttatatgtCTAATGctaaataaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021793 True 4094 mRNA 0.41 6 30142222 30158707

Neighbor

gene id symbol gene type direction distance location
AMCG00021788 NA coding downstream 93351 30047330 ~ 30048871 (-)
AMCG00021789 LOC105890378 coding downstream 97120 30042879 ~ 30045102 (-)
AMCG00021786 LOC106597666 coding downstream 156029 29974986 ~ 29986193 (-)
AMCG00021787 NA coding downstream 295844 29842364 ~ 29846378 (-)
AMCG00021783 dtnbp1b,LOC108272579 coding downstream 479335 29648775 ~ 29662887 (-)
AMCG00021796 LOC105009370,LOC106588819,LOC100696657,LOC107596629,LOC102210154,LOC107685565 coding upstream 97324 30256031 ~ 30265454 (-)
AMCG00021797 LOC106570559,LOC105012503,LOC102295214 coding upstream 125965 30284672 ~ 30285136 (-)
AMCG00021801 LOC107743838 coding upstream 223253 30381960 ~ 30386817 (-)
AMCG00021805 acot13,LOC102778390 coding upstream 235672 30394379 ~ 30395918 (-)
AMCG00021808 NA coding upstream 267409 30426116 ~ 30428501 (-)
G88435 NA non-coding downstream 194682 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 300683 29838518 ~ 29841539 (-)
G88347 NA non-coding downstream 861349 29279361 ~ 29280873 (-)
G88245 NA non-coding downstream 1310998 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 1330257 28811763 ~ 28811965 (-)
G88545 NA non-coding upstream 266597 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 367039 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 802996 30961703 ~ 30962096 (-)
G88736 NA non-coding upstream 1640045 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 1700702 31859409 ~ 31859833 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 399414 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 1070462 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 1358941 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 3222378 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 3423714 26674078 ~ 26718508 (-)
G88527 NA other upstream 178876 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 719141 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 970876 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 1904678 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 4101297 34260004 ~ 34356907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_07516390_07526784 TPD52 coding CI01000054 null 7516167 ~ 7527449 (-)