AMCG00021799 (si:dkeyp-120h9.1,LOC106570559,LOC105012503)


Basic Information

Item Value
gene id AMCG00021799
gene name si:dkeyp-120h9.1,LOC106570559,LOC105012503
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30291241 ~ 30299913 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021799
AGTTTTGCTCACCTCTGTGAACTGTATGAAGGTAAAGTGGGGGGCGATACTGCAGGTCGTCTCCACTGTGGCCAAGGTCCTCGCCTTGATTGTCATCATTATCGCCGGCCTGGTGAAGCTTGGCCAAGGGAACACTCAAAACTTTGAGGACTCCTTTAGCAACTCCAAGCTAAATGCAGGGGATATGGCGCTGGCTCTGTACTCGGCTCTGTACTCCTACTCTGGGTGGGACACCCTCAACTATGTCACTGAAGAAATCAAGAACCCAGAACGGAACCTGCCATTGGCAATTGCCATTTCAATGCCAATTGTGACTGTTATCTACATCTTGACCAATATTGCTTATTACACTGTTTTGGACCTGGACACAATCTTAGCCAGTGACGCTGTGGCAGTGacCTTTGCAGATGAAGTTCTTGGGTATGTAAAGTGGCTGATCCCGCTGTCGGTGGCCATATCTTGCTATGGTGGATTAAATTCTTCAATTATCGCTGGCTCAagGTTGTTCTTTGTAGGCTCCAGAGAGGGTCACCTGCCTAACATTCTGTGCATGATCCACGTAAGAAGATACACTCCCATTCCAGCCCTGCTTTTCAATGGTGTGATGTCCCTGGTCTACCTCTGTGTGAGGGATGTCTTCCAGCTCATTAACTACTTCAGCTTTAATTACTGGCTGTTCATTGGTCTCTCCATCGCCAGTCAGATATACCTTCGAATCAAACGCCCAGAAATGCCCAGACCGGTCAAGcTGAGCCTGTTTTTTCCAATAGTCTACTGTATCTGCAGCATCTTTCTGGTAGTGATGCCTCTGTACAGTGACACTGTGAACTCCCTGGTGGGAATAGCAGTGGCTCTGTCAGGGGCCCCAGTCTACTACATCTGTGTGCACCTCCCTCCGGAGAGGCGCCCTGCCATCCTTGGCAGACTGCTAGatctcTTCTCCTTGAACACTCAGAAGTTGTGTATGTGCTGCCTAGCTGATCCGGACCTGGACCTGGACAATATCTCTGAATCCAAGCTAGAGTAAAGACTTGCAAGAGAAGCTGCAGCCAGCCTGACGGGAGCACAGTGAGCTGCAAGATCATAAGGAAAGTCTAGTCTTTTATTATGGTTAACTTTTATGAaggcactttttgtttttttttctgttgttggcTTTTTTAGTTGGTAAAATGTAGTTCCAGTGAAACACAATATTGTCAGGCTACATGTTTAAGTAGCAACACGTGggaacattttataaaaaaaatattcttgaacaattattttatttgaaaggaaaagtgtaaaatgtttgCCTGGTTTTAGACACCTGGCAAACGGAGGCTGCTGGGATGTTTTTGGTTGTCGTCCGTCGTGCTCGGCGCTCTCCTGCACTGTGAAGAGGCTTCAAGGCAGCATAAACAACAGGCTATTGAGGGCGATACTCGGTGCCGGAAGCGTGACTATGAACATTATCACTGCAGTGGAGCCCCTTTCTCAACAATGTTCCTCCAACCTCTGTTCTGGGGGGTTGATAGTGAAAGGAACAggaaaggtttgtttttttacatttgattgtttttaagttttgtttcaagtttcttttaaaatgtacatttgaaaagtTCTAGTTCAAAATTCATACTAGAAGAGTCAAAAAAGGACCATCTTAACCAGGTTTGGTTGAGACAGGATACATGTTGTGATAGAGGCATGTTAggattttttcaaaataattattggctttattttattagttcTAGTAGTTTAAACAGTTAAAGGCTGTCTGCTCACTCTTTTGTGATATACTTCTTACACACATTGACCACTCCGGCGAAGGACAAGAAAGTCCCAATGCAGTATTTGGGAATCTCTACGCTCGAAGCAAACATTTGTGTATAATACAAACTTCTGTTCTTCACTGTTCACAAAACATTCTCTTTCGGCAATGCAGCTGGTAATTGCAGTGCACTTTTATCTTTGGTCTTGTACCTCACCATGTAGGGAATGAGGGAGAAGGGTCATTCCAACAGTGTAGAGACTGGATCTCTGCTCTTCATATCcaattgttcttgttttacCATCACaccattacttttttatatttttctacacCGTTAAAATGGGGTATACATTTACAGGACAGCAATAAAGtacacataaattatatatttaacaaattaactttatcagtgtatttaaaatatctattgCATTCAGTTCTCCACAAGCTGAAAATCTCTGAACGAGATCAAACAAAAGGTAAGCTGACGGTTTACAAggcattacaaaaaacaaagctgtgaTTAACTGCATTCATGTCTAAAACCAAAACCATAGATCAtcttatttattgcatttgccACAAAAACATTGTAGAATCTTTTATATGTACCTCTGTGGAAACGTAATGGAAAAACTGCCACCTATGAACATGCTgccaaaaatacaattatttaaatctggAATGACACGCCATATGTCACTGGCCTAGGTTCTCACAACGACCAAAAGGCTGACATGAAAAGTGGTGCAGTATGGGCTTAGCTTGAGTATATTAGGGCTCCAAACCGTGCtaataatggaaagaaaaacaatctatgCCTAGTTTTCCCACTAGGGAGCCTGGCAAACGCAACAAACTAAAAAATCCTGCCACACGGAGCAGAACTATTCCCCCCTGCCTTGCGGAGGGCTCTGGGTGTCTTTTACTCCATCAGTCACTGACACCCAATTCACTCTCATTGGGAAATACTATTAATAAAGGCGGTGGTTGATGCGCTCATTAGATCAAGCGCAGGAATCCCATGGGTCTAATGTCAGGGATTCCCCTGCATTTGCCTATAGTGAGCAAATGGGCCCATGCCCCCCGGTTTTAATCTACGAATATGTACCAATAGAAATTGATATCTCTTATACCTAATAAGCTGAATCACTTTATTCAAACGTACATTTTGTGAATAGCACCTGACAAACAGCAGAGGAAAGCAAAGCCATCTACACTCAGTGTTTAATGGAGCGCATACATGACCAGCCTTTCCCACTTTCCCATGTTCAGCACATTGGCATTGCATGTCCGAAGCAGCGATAGACAGGTACAgttttttattaagatgtgGAACTATTGAGATCTGTGTTGTTTGATTTAGTAATGTCACTGCATTGCAATTGAAAATGCTGCTGATCCAGCAATTGGACTGGCTCATTTTCATCAAGTTCAAAAATGTCCTAAgtagaaactgaaaatgaagtaGCAAAgatttaatgtatgtttgttttttgagggGAGGATTGCGATTTCATCTTTTAACTATTGTAACCTGTATTGCCGACCCTGTAGTATCACATCTAAAGGCTTTGGGTTTCTATTGACACCCTGATTTGTCAgttaaattgtaaaaaatgaCTTCTAAAGTGCCTTTTTTTGTGTAGTTCAAGAATGCCAAAAAATAGTACATAATGGTCAGATTCAGTCATCAAATGTTGAATTTCCTATTTAATACAgattgaataaaaatgtttgtaaaatgacaaacaaCCCATCTGTCTGCTTGAATTTCAATTTCTATACCATGATATAGATACAGATAGCTTTGTCATTATACATATTTAGTCCATTTCCTTCcaatctatatttttaaagagcagCTTTTGTATGTGCCTTCAAACAGAGTTACACTCTGTACTCTGTATTTAGTTTCCTAGAATTGAATGTCCAGTGCTGGTATTAGCTATATGTAACTGTAGTCAGGcaaatatacaatatgtttaaGGCAGCTGGACAGCTCTATAGGATTCATTGATGTTTTCCATAACTTTCTTTACAGTTATCCAGTGTTTTGATTGTATTGATAGAGGGTGGCGAATATATTTTGCAACCCTTACGTTATATAGTCTGAATATGTGAAAAAAGGTTATGGTACACAACTGCCCGATGCTTCTACCTCGTGAATTCATGTCATTCCCCATAGTATCTCATTGTAATTCCCATGGTTCTTAATGTTTGCCACCATTTGTAACTTAAGTGGAGTGTGCATGGGTCCATGACAGTCCGTCCCCGCAACAATCCGTCCCTGTGTCAATTCACCCCCATCATTATACATTCTCCACTTgaagagccatagaacacacatacgtgtatatatagtaggcaggctatttaaatgtatataaatacacacacacacatactttgtattatttattataatgtatgtttttaattgatacattaatttgagactaaccccattaattatttttacaattagtCATGACAGATGGCAGTGACGGCTGCaagctacttaaaataggtttcatgttAAAGCTCTATATTGAACCCAGATCACCAGGTTTGCAGTGCTATTCCCTAACCACTGCAACTGATACAG

Function

symbol description
si:dkeyp-120h9.1 Predicted to enable L-amino acid transmembrane transporter activity and basic amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and regulation of arginine metabolic process. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC7A13 (solute carrier family 7 member 13).

NR:

description
PREDICTED: Y+L amino acid transporter 2-like

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021799 True 4373 mRNA 0.40 8 30291241 30299913

Neighbor

gene id symbol gene type direction distance location
AMCG00021795 hey1,LOC104947062,LOC107584259,LOC102780967 coding upstream 36888 30250083 ~ 30254353 (+)
AMCG00021794 NA coding upstream 90723 30185320 ~ 30200518 (+)
AMCG00021791 znf704,LOC107696217,LOC107555575,LOC107702114,LOC107584255 coding upstream 164834 30119020 ~ 30126407 (+)
AMCG00021792 NA coding upstream 188111 30093869 ~ 30103130 (+)
AMCG00021790 NA coding upstream 199751 30077372 ~ 30091490 (+)
AMCG00021800 NA coding downstream 47911 30347824 ~ 30375199 (+)
AMCG00021798 NA coding downstream 79834 30379747 ~ 30381378 (+)
AMCG00021804 NA coding downstream 108703 30408616 ~ 30432115 (+)
AMCG00021810 kcnv1 coding downstream 182663 30482576 ~ 30492325 (+)
AMCG00021812 dpy19l4 coding downstream 227119 30527032 ~ 30561697 (+)
G88485 NA non-coding upstream 33044 30256024 ~ 30258197 (+)
G88452 NA non-coding upstream 71745 30142195 ~ 30219496 (+)
G88454 NA non-coding upstream 151957 30137538 ~ 30139284 (+)
G88450 NA non-coding upstream 242353 30047128 ~ 30048888 (+)
G88440 NA non-coding upstream 312682 29975041 ~ 29978559 (+)
G88609 NA non-coding downstream 427371 30727284 ~ 30730868 (+)
G88655 NA non-coding downstream 747890 31047803 ~ 31048529 (+)
G88666 NA non-coding downstream 830434 31130347 ~ 31132235 (+)
G88677 LOC101154678 non-coding downstream 914396 31214309 ~ 31214669 (+)
G88741 NA non-coding downstream 1558922 31858835 ~ 31859037 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 905916 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 1015894 29264827 ~ 29275347 (+)
G88276 NA other upstream 1225902 29060887 ~ 29065339 (+)
G88238 NA other upstream 1512508 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 2654157 27632915 ~ 27637084 (+)
AMCG00021802 kdm1b other downstream 150044 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 4626640 34926553 ~ 35077090 (+)
G89142 NA other downstream 4911220 35211133 ~ 35263537 (+)
G89299 NA other downstream 5664658 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 6350319 36650232 ~ 36659244 (+)

Expression


Co-expression Network