AMCG00021801 (LOC107743838)


Basic Information

Item Value
gene id AMCG00021801
gene name LOC107743838
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30381960 ~ 30386817 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021801
GTGATCAGCCCCGCCTACCAGGAGCGGAAGCACGCGAGCAGCTCCGCGCGCGGGACGAGGCGAGCCCGGAGCACGTGACCGCGGCGGCTATAAGGGAACCGCGCGAGCAGACGAGCCCAGTGTGGTAGACTGTGAGAGCGCGCCGTCAAGCTGAGAAAAATGAATTTCATTCCAAAAGCCAGACAGGATGGGGTTAAGCCTTCTGCAAACATAAAGagCTTTTTAACGGGGGGTGTTCAAGAAGGATCTGGAAGAAGAACTTTACAAGTCCTTCAGCCATCTGCAATGAATGGGAACCTGGTTGGAAGAGTAAAAGAGCCAGTGAAGTCCTTCACAAAAAGAAAGTTGTGGAGTGCTGAGCCAAAGGGCTCAAAACGAGTCAAAGCTGAAGTTGCAGTGTACACCGAGgccaatgaaaatgaaaatctgtctGAAGGAATGACAAAGGAGGCATATGAGCTTATGGTCAAAGaaaccCCACCATCCAGCTACTGGAAAGAGGTAGCAGAAGAAAGGCGGAAGGCACTGTATAATGTTCTTcaggaaaatgaaaagTTGCACAAGGAAATTGAATCCAGAGATGAGCAGATCTCTCAGCTGAGGCACGATAATGAAGAACTGCAGGAGCTCGCACAGCATGTTCAGTACATGGCAGATATGATTGAGAGGTTAACGGGGAAGAGTCCAGACAGTCTTGAAGCGCTGAGAGACCTGGATttggaagaggaggatgagcCAGAAGAGGAGGATGAATCGGAAGAGGACCTCAGCAGTGACGAAGAACTGCTGGAGGATGATTGTGAGGATGCTGCTGGAACAGTGTCGGAATCGAACTGAAttaattgactttttttaaaattGGGCACTAAGTGCAAGAAGACCTGTGAAGTGGCACGCGTCAAAACTGTTCTAGTGCTGCTTCACAATTTGAACACCATTGCTCCAGCCTTTTCCAGCAGTTGGCCCTGCCTTGTGAAATAGTggtctggttttatttttaaaagctagtTTGTTGGTCTCCATTCTGCCATAGCTGTTAGAAATTAAGATTTCAAGATTGAGTTCCTTCTTTTGGAGAGGGGAAATTTGGGTGAACAGAGGTTTCAATCTAGCAGAATTGATCTGTTCTACTGCAGGAGTTTATTTAAAGGCAGCTGTAATTTTGAATGTTCTGGTTCTACTTGCCTCTGACTGGCAGATTTTTTGCAAAATGCCATCGCCAACGGTGTTCACTTTAACATTTGACTTGCTTGCATTGTGTTCGACTCTTTAATGATGATATTAAGGATTATACCCACCCTGACAGTAACAATGTTCAGGGTTTTAAGTTCAACATCTGAAACATCAGCTGAGTAGTATATttggctgtatttattttatgtaatgtatggCTGTGAGCAGTTCATTGTCTTGTCTACAAAGACCTGGGATAACTCTTCTGTATTGGAGAACTTAAATAGATTTGTGACTTGCACTGCCATAGTGGGAGGGATTTAATCTTCCTAATGCTAGGATGTATGTTTAAAGGTCCACTGTGCAATATGGGATTGACCAGCTGTCAACTTAAAATGGGTAATGTTCATTGTGCAGTTTTAATGCATCCAATCTGTatatactttacattttgtgaaagatttcatttgtactttaataaatgtgaagattgttttttaa

Function

NR:

description
PREDICTED: geminin-like

GO:

id name namespace
GO:0006275 regulation of DNA replication biological_process
GO:0005515 protein binding molecular_function

KEGG:

id description
K10749 GMNN; geminin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021801 True 1674 mRNA 0.44 7 30381960 30386817

Neighbor

gene id symbol gene type direction distance location
AMCG00021797 LOC106570559,LOC105012503,LOC102295214 coding downstream 96824 30284672 ~ 30285136 (-)
AMCG00021796 LOC105009370,LOC106588819,LOC100696657,LOC107596629,LOC102210154,LOC107685565 coding downstream 116506 30256031 ~ 30265454 (-)
AMCG00021793 NA coding downstream 223253 30142222 ~ 30158707 (-)
AMCG00021788 NA coding downstream 333089 30047330 ~ 30048871 (-)
AMCG00021789 LOC105890378 coding downstream 336858 30042879 ~ 30045102 (-)
AMCG00021805 acot13,LOC102778390 coding upstream 7562 30394379 ~ 30395918 (-)
AMCG00021808 NA coding upstream 39299 30426116 ~ 30428501 (-)
AMCG00021807 NA coding upstream 47110 30433927 ~ 30444924 (-)
AMCG00021806 NA coding upstream 75194 30462011 ~ 30469642 (-)
AMCG00021809 NA coding upstream 132184 30519001 ~ 30519513 (-)
G88435 NA non-coding downstream 434420 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 540421 29838518 ~ 29841539 (-)
G88347 NA non-coding downstream 1101087 29279361 ~ 29280873 (-)
G88245 NA non-coding downstream 1550736 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 1569995 28811763 ~ 28811965 (-)
G88545 NA non-coding upstream 38487 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 138929 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 574886 30961703 ~ 30962096 (-)
G88736 NA non-coding upstream 1411935 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 1472592 31859409 ~ 31859833 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 639152 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 1310200 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 1598679 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 3462116 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 3663452 26674078 ~ 26718508 (-)
AMCG00021820 NA other upstream 491031 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 742766 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 1676568 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 3873187 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 3960171 34346988 ~ 34380295 (-)

Expression


Co-expression Network