AMCG00021803 (clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136)
Chromosome Information
Item |
Value |
chromosome id |
CM030130.1 |
NCBI id |
CM030130.1
|
chromosome length |
39556810 |
location |
30267402 ~ 30407772 (+) |
genome version |
AmiCal1_2021_bowfin_Genome |
Sequence
>AMCG00021803
ATGGGGGACCCAAACTCCCGAAGAAAACAAACGATGAACCGCCTTCGTGCTCAGCTTCGGAAGAAGAAGGAGTCTTTAGCTGACCAGTTCGACTTCAAAATGTACATCGCTTTCGTGTTCAAGGAAAAGAAGAAAAAGTCTGCACTTTTCGAAGTAGCTGAAGTGGTACCGGTTATGACGAATAACTACGAAGAGAATATTCTTAAAGGTGTGCGTGATTCCAGCTACTCCTTAGAAAGTTCCTTAGAACTGCTGCAGAAGGACGTGGTGCAGTTGCACGCCCCGCGCTACCAGTCCATGCGCAGGGATGTCATTGGTTGCACCCAAGAGATGGACTTCATCCTTTGGCCTCGCAATGACATTGAAAAGATAGTCTGTCTTCTGTTCTCCAGATGGAAGGGGTCTGATGATGAGCCCTTTAGGCCTGTTCAGGCCAAGTTTGAATTTCATCATGGAGACTACGAGAAGCAGTTTCTGCATGCAATGAGCCGAAAAGACAAGGCTGGAATGGTCATGAACAACCCCAGTCAGTCTGTGTTCCTGTTTATGGACAGACAGCACTTACAGACTCCAAAAAACAAGGCCACAGTTTTCAAGTTGTGCAGCATCTGCCTTTACCTGCCACAGGACCAGCTGACCCGCTGGGGGgataaATGttcattaatCTGGGATGAGGGAGGGCAGACTTACGTGATGTTCATGTCCACGCTGACCCCTGGCGCTTGCCGCTCCGTGTGCAGTAACGCGACTGTGGACACCACGTCCACCAGTGTGGCCGTCATGCCTCCGTGCAGAGTGCCGCCGCGGTTGCTCTGCGCCGAGTTCGCCTCCGTCACCAGCTCCGACAAAGCAGTGGCTCAGTGTTACCTTGCCGAGAATGACTGGGACATGCAAAGAGCTTTGAACTCTTTCTTTGAGCCGGACGTGGAGTTCCTCTCTGGTGACGTGTCCCCACACCCGAGTGACGCAGCCGCAATGGAGAGCCAGTCTCAGGCCGTGGCATGCATTGACCTGACTGAGGACGAGCCCACCAGCAGCAGATCAGAAGGCGGCAGTGGAGCAGGACAGTCGGTCCAGGCAGAGCAGGATGAGGACAAGGACAAACTCTCCCTGGTGACTTGGAATATCGATGGGCTGGACTCGGATAACCTCAGAGAGCGCTCCAGGGGACTGTGCTCCTATTTAGCCCTATACAGCCCAGATGTGGTGTTTTTGCAAGAAGTTATACCACCAATTTTAGATTACCTTAAGAAGCGTGCTGTCAGTTACAACATCATTGAAGgTAATGATGAATATTACTTCACCGCCATAATGCTGAAGAAGTCTCGTGTGAAACTCTTGAAAAGGGAGATTGTTCCTTTCCCTTCGACATCAATGTTGAGGAATCTGCTCATTGCAGAGGTCAGCTTCTTTGGGTCAGAGCTGTGCTTGATGACGTCCCATCTGGAAAGCTGTAAAGAACACTCCAAGGAGCGTGTGAACCAGCTGAAAATGGTGCTGAAGAGAATTGGAGAGGTGTCTGAGAATGTCACTGTAATATTTGGGGGAGACACCAACCTTAGGGATCAGGAGgtgACGAAGCTAGGTGGACTGCCCAGCGGTGTGTGTGATGTCTGGGAGTATCTTGGCAAGCCAGAGCACTGCAGGTACACCTGGGACaccaaaaccaacaacaacaagaagGCTCGCTACTTCTGCAGGTTGCGCTTCGACCGCGTCCTCCTCCGGCCTGCCAAGCAGGGAGCTCAGATCACCCCCCAGCACATGGACCTGATCGGGTTGGAGAAGCTGGACTGTGGCCGCTTCACCAGCGACCACTGGGGAATCCACTTTCCGCCCTTCGCTACATCAGGACTAACAGAAGGAGATACAATGGACAGTGAGCCTAAACCTGTGGCAAGCACTGGGGTGAAGGAGGATGAGCCGAGCAGTGCCAGCCCAGAGGAGGGAAGTGAAATCGAGCATTCGTCCCAAGAAGAGCAAGAGGAGCAGGTTAAACTCTCCCTCCTGACCTGGAACATCGATGGACTTGACACTGAAAACATAGTCGAGCGTTTCAAAGGAATGGTCTCGTATGTGGACAAGTTAAGTCCAGATGTGGTGTTTTTGCAAGAACTTATACCGCCATATTTACATTTcctaaagaaacattttaagcaaTACACTATTATCGAAGGTAACACTAAGGGTTATTTCACTGGCATTATGCTGAAGACGTCTCGTGTCACACTGTTGAAAAGTGAGATTGTCAAATACCCGACCACAGAAATGGGGAGGAATCTGCTCATGGCACAGGTACAATTCTGTGGCATAGAGTTGTGTTTGATGACGTCCCATCTGGAAAGCTGCAAAGGAAACTCCCAGGAGCGTGTGAACCAGCTGAGGAGGGTGTTTAAGAGACTAAAAGAAGCACCTGACAGTGTCACCGTGATATTTGGGGGAGACACCAACCTCAGAGACTGGGAGgTGGGGAAGCTCGGTGGGCTGCCCACTGGTGTGTGTGATGTCTGGGAGTATCTTGGCAAACTGGAAGTCTGCAGGTACACGTGGGACAACAAGATCAATGACAACAAGGACACCTCGTACTGTGCCAGGCTGCGCTTCGACCGCATCTTCCTCCGGCCTGCCAAGGAGGGAGCTCAGATCGCCCCCCAGCACATGGACCTAATCGGGCTGGAGAGGCTGCCCTGTGGCCGCTTCACCAGCGACCACTGGGGTCTCCACTGTGgcttcacagtgcagacacAAACCTCACCAGCAACGACTGCGCTACACTGAGAATAGGTCCTGTTTATGAAGCAATGCACACTGGGTATTTGAGCAGAATCTCGGTACAGAAAGCCTCACGCTTTCTTATCTCTCCTCAGATTCATTTTCAGGTGGCTTGTTTCATGAAATACTGTGTACTTTTACTCAGtagagtggagtggagtggagtgtaGGTTGTAGGCCTTgattgggtttgttttttagtcACTGTAAATGATTCATACCTGTAAAGGTACCTTTTTCATATTAGCTTTTCTTTATATCTTTTTAACAACTAATCTAAAGTAAGGGAGGTTATGTACTGCgtaaaaaacagcacatttcattttttttggtagccttttaaaatggtttgtaCATTTACTGTTCTTTCTATTGCTCTTACCTGTGCAgtaatgatatttaaattaactgttcTCATTCAGACAGGTACACTAATAGTTTGCATAGTTTGTTAAAATTTGAATGGTTTTGTGAAAAAGCTTAACCTTAGTTTCAGTTGGATACATGCTTAAGAAATCTTTGTAAGTATTTCTACTTTTGTAATCAATGTTTTTGGGGCACTTCTTGctgattgctttttctttctaaatacaTATATCTAATGGAAGGAGTACCATTTAcgtattttgaaatatgaacataatatatataaattatatgtaaGAATAAATATGTGac
>TU110432
TTTTGGGTTGTTTGTTCTGCGAAGGCCACTTCTCATCGTCTACAGGAGGGGAGCGCCGCGCCGAGGACACGACCGACCGAGCAAACCTCATTTCACGCGTTCACCGCCGAGCATGGGTCCGCCAGGGAGCAAACCGCGCTGTGTATCGTTTGAAAGAATGGAGGATTTCGGTTGGTTTGTCAATTTATCTTGACATGGCGTGTTGGTGGGTGGGGGCTGACGAGtgaaaaaaaaccaaaacaaaacaaaaaacacacacacacacacacacacacacacaaaagaaaaccaagtAAAACTATTTATTACGAAGTCAGATCACACAAATAGTCGAATCACTTTTGCGATGGTGATCTAAGGAAGACGTGTAGGTGCGTGAAGCGTATAAGCATGGCGACACGTTAGAAAGCGGTTTAAAAATGGCCTAATGCGCAGTTGAACCTCAGCTGAAGCACTGCACCGCTCGGAGAATGTAAAGGGAAACGCAGCGCACCTTTTACTGGCAGGCCGCGATTACGCCTCGTCACACTGGATAAGATGTAGTGGTCGTGTCTGTCGTCTCTCGGGCTCTTTGAAAACGCCATCATTATGAACACAGTTGCTGGGCCAGTGCTATTGCCAGTGAACTCCGACAtgtcttctctgtctttttcCCTTTCGTCTGGGGCCATCCTCTCCCGGCATCTGCCTTTCCCTGCCTCGGTCCTCTGTACTCCCCATCCTCTAATAACGCGTTCATAAAAGTAGTCTCTGGAGAGAAATCAAATCCAATAGCACCAGCCATGGACGAGGCTGGGAGAAGACGAACATaagtgtacttttttttttgtttgtttgtttttatatttcgtAGCGATTGTGTCGGCATGGGTTTGATCGCCTCCTTTCGGTTCTTGTCAATTGCATTGTGTGTAGGAATATACCGCatcttaatttgatttttttttttttttccttttggttaAACTCGTTTATTTGGACCCTTCTGTGAAACTGAGTGGCTGGATTTGTTTCGTGTATTTTGGCATAACTAGCTCTGTTCTCCTTCAGTATCAGTATGATCtcttaaatcaaattaaaaataaataaatgcgaATGAACCCCCCTTCCCCACTCGCACCTTCTCACAAACCGCGAAACATGACTTAAGTTTGTATTAGTCCCATCTATTAGTAGTTAGAGTAGACCTTTCACTTAGAGTAGGAATCTACTTTCTTTTctctagtttaaaaaaaaagggaactTGGCACTTCACCCCATGtgctagttaaaaaaataaaatctaaaaaaaattaaaataacgaaaatctatttaaaaaaaaaaagaaaaaaaaaggaaagcgaCCACCATCAGAAATTCACAATGGGGGACCCAAACTCCCGAAGAAAACAAACGATGAACCGCCTTCGTGCTCAGCTTCGGAAGAAGAAGGAGTCTTTAGCTGACCAGTTCGACTTCAAAATGTACATCGCTTTCGTGTTCAAGGAAAAGAAAAAGTCTGCACTTTTCGAAGTAGCTGAAGTGGTACCGGTTATGACGAATAACTACGAAGAGAATATTCTTAAAGGTGTGCGTGATTCCAGCTACTCCTTAGAAAGTCAGGACCAGCTGACCCGCTGGGGGGTGGGAGGCATTGAGGACCACCTCCGCCCCTACATGCCAGACTAGGGTCAACGCCTAGCCACACAGGGAAGATCCTAGAATACCAATACAGCAAGCTCACCTCCACAGAGATTCCTTTATTGATGACAAGTGAACTCGTGCTTGGAACACTCCTTTGTTAACCATTCTCATTAATCCTGGAGCTtcttatttcattcattttattttttaccaaatctagttgttttttttttgtttttttttcctctctctttgaACCTGCACGAACATTGGTTTGTCTGAGTGGTTGTTCCTCGGAGCAGCATTGTTATGGAAAACCAGTAATGGAAGGAACTCTATATGCAAAACAGGAACAAATGACTAAGGTCTTAATGATGGTCCTCTCATTTTGCACTGGTTGTGTGTCCCTGTCATGaatgatactttttttttttttttttttacaggataaATGGTAccagacattttgtttgtttttacagttcattaatCTGGGATGAGGGAGGGCAGGTGAGCAAAAAGTGTGATTTAACTAAACTCTATTATAGATCCTGGAAATGCAGATCAACAAGGTGAAGAACCTTGTCAGTGATCATTCAGTGTAGGCATTgcctttttgttcattttgatttataccTGCTGAGCTGTTTTGAGTTTTGCTGGCTCTTATTTTTGGATATCTTTCCCTGAATTGGCTAagaatttttaaaattatttttcttttgtgaagtTTTATGTACATTAATGCCAGGCAGACCCTAGGTAACATCTGGAGCATGATCAGCTTGGGGATGAGGGTGTAATAATGTGAtgcaaaactgcagaaataAGCTTAAAACGTAATGTTTTCAATGCATATGGTCACATATATTGTTACCACATAAGCAAGTCATGCACTATATTCTGGCTACTGAAAACACATTGTGGGGCTCTAGGAGGGGAAATGTAAAGTGGGGAAAAGATGAAGTACCTAGCAACTACAAGCTGtggaaaactaaattaatggGAGTGTTTAGATttgaacttttttgtttttgttttgaaaggcaAAACTCTTGAAGAGTTAATTGTTGCAGTGCTTTAATGGGATGGGTATTTGTAAGCTGGCTTTACTGGGTATAAGGCACATCAGCAAATTTATATTTGCCTTCTGTAAAATcaacacattgaaataaatgggTGAAAATAATTTACCAT
>TU110433
aaaaaaaaaaaaaaatatttaaaaaaaaaaaaaaaaaaaaaaaaggaaagcgaCCACCATCAGAAATTCACAATGGGGGACCCAAACTCCCGAAGAAAACAAACGATGAACCGCCTTCGTGCTCAGCTTCGGAAGAAGAAGGAGTCTTTAGCTGACCAGTTCGACTTCAAAATGTACATCGCTTTCGTGTTCAAGGAAAAGAAAAAGTCTGCACTTTTCGAAGTAGCTGAAGTGGTACCGGTTATGACGAATAACTACGAAGAGAATATTCTTAAAGGTGTGCGTGATTCCAGCTACTCCTTAGAAAGTCAGGACCAGCTGACCCGCTGGGGGGTGGGAGGCATTGAGGACCACCTCCGCCCCTACATGCCAGACTAGGGTCAACGCCTAGCCACACAGGGAAGATCCTAGAATACCAATACAGCAAGCTCACCTCCACAGAGATTCCTTTATTGATGACAAGTGAACTCGTGCTTGGAACACTCCTTTGTTAACCATTCTCATTAATCCTGGAGCTtcttatttcattcattttattttttaccaaatctagttgttttttttttgtttttttttcctctctctttgaACCTGCACGAACATTGGTTTGTCTGAGTGGTTGTTCCTCGGAGCAGCATTGTTATGGAAAACCAGTAATGGAAGGAACTCTATATGCAAAACAGGAACAAATGACTAAGGTCTTAATGATGGTCCTCTCATTTTGCACTGGTTGTGTGTCCCTGTCATGaatgatactttttttttttttttttttacaggataaATGGTAccagacattttgtttgtttttacagttcattaatCTGGGATGAGGGAGGGCAGGTGAGCAAAAAGTGTGATTTAACTAAACTCTATTATAGATCCTGGAAATGCAGATCAACAAGGTGAAGAACCTTGTCAGTGATCATTCAGTGTAGGCATTgcctttttgttcattttgatttataccTGCTGAGCTGTTTTGAGTTTTGCTGGCTCTTATTTTTGGATATCTTTCCCTGAATTGGCTAagaatttttaaaattatttttcttttgtgaagtTTTATGTACATTAATGCCAGGCAGACCCTAGGTAACATCTGGAGCATGATCAGCTTGGGGATGAGGGTGTAATAATGTGAtgcaaaactgcagaaataAGCTTAAAACGTAATGTTTTCAATGCATATGGTCACATATATTGTTACCACATAAGCAAGTCATGCACTATATTCTGGCTACTGAAAACACATTGTGGGGCTCTAGGAGGGGAAATGTAAAGTGGGGAAAAGATGAAGTACCTAGCAACTACAAGCTGtggaaaactaaattaatggGAGTGTTTAGATttgaacttttttgtttttgttttgaaaggcaAAACTCTTGAAGAGTTAATTGTTGCAGTGCTTTAATGGGATGGGTATTTGTAAGCTGGCTTTACTGGGTATAAGGCACATCAGCAAATTTATATTTGCCTTCTGTAAAATcaacacattgaaataaatgggTGAAAATAATTTACCAT
Function
NR:
description |
PREDICTED: uncharacterized protein C6orf62 homolog |
GO: NA
KEGG:
id |
description |
K19619
|
TDP2; tyrosyl-DNA phosphodiesterase 2 |
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
AMCG00021803 |
True |
3450 |
mRNA |
0.48 |
22 |
30390200 |
30407772 |
TU110432 |
False |
2821 |
TUCP |
0.41 |
3 |
30388837 |
30394221 |
TU110433 |
False |
1530 |
TUCP |
0.38 |
5 |
30267402 |
30394221 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
AMCG00021795 |
hey1,LOC104947062,LOC107584259,LOC102780967
|
coding |
upstream |
13049 |
30250083 ~ 30254353 (+) |
AMCG00021794 |
NA
|
coding |
upstream |
66884 |
30185320 ~ 30200518 (+) |
AMCG00021791 |
znf704,LOC107696217,LOC107555575,LOC107702114,LOC107584255
|
coding |
upstream |
140995 |
30119020 ~ 30126407 (+) |
AMCG00021792 |
NA
|
coding |
upstream |
164272 |
30093869 ~ 30103130 (+) |
AMCG00021790 |
NA
|
coding |
upstream |
175912 |
30077372 ~ 30091490 (+) |
AMCG00021804 |
NA
|
coding |
downstream |
844 |
30408616 ~ 30432115 (+) |
AMCG00021810 |
kcnv1
|
coding |
downstream |
74804 |
30482576 ~ 30492325 (+) |
AMCG00021812 |
dpy19l4
|
coding |
downstream |
119260 |
30527032 ~ 30561697 (+) |
AMCG00021813 |
NA
|
coding |
downstream |
161430 |
30569202 ~ 30573271 (+) |
AMCG00021811 |
NA
|
coding |
downstream |
210147 |
30617919 ~ 30678407 (+) |
G88485 |
NA
|
non-coding |
upstream |
9205 |
30256024 ~ 30258197 (+) |
G88452 |
NA
|
non-coding |
upstream |
47906 |
30142195 ~ 30219496 (+) |
G88454 |
NA
|
non-coding |
upstream |
128118 |
30137538 ~ 30139284 (+) |
G88450 |
NA
|
non-coding |
upstream |
218514 |
30047128 ~ 30048888 (+) |
G88440 |
NA
|
non-coding |
upstream |
288843 |
29975041 ~ 29978559 (+) |
G88609 |
NA
|
non-coding |
downstream |
319512 |
30727284 ~ 30730868 (+) |
G88655 |
NA
|
non-coding |
downstream |
640031 |
31047803 ~ 31048529 (+) |
G88666 |
NA
|
non-coding |
downstream |
722575 |
31130347 ~ 31132235 (+) |
G88677 |
LOC101154678
|
non-coding |
downstream |
806537 |
31214309 ~ 31214669 (+) |
G88741 |
NA
|
non-coding |
downstream |
1451063 |
31858835 ~ 31859037 (+) |
AMCG00021779 |
LOC108438266,LOC105891906
|
other |
upstream |
882077 |
29378575 ~ 29385325 (+) |
AMCG00021772 |
NA
|
other |
upstream |
992055 |
29264827 ~ 29275347 (+) |
G88276 |
NA
|
other |
upstream |
1202063 |
29060887 ~ 29065339 (+) |
G88238 |
NA
|
other |
upstream |
1488669 |
28778315 ~ 28778733 (+) |
AMCG00021745 |
NA
|
other |
upstream |
2630318 |
27632915 ~ 27637084 (+) |
AMCG00021802 |
kdm1b
|
other |
downstream |
42185 |
30449957 ~ 30468920 (+) |
AMCG00021881 |
LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168
|
other |
downstream |
4518781 |
34926553 ~ 35077090 (+) |
G89142 |
NA
|
other |
downstream |
4803361 |
35211133 ~ 35263537 (+) |
G89299 |
NA
|
other |
downstream |
5556799 |
35964571 ~ 35967384 (+) |
AMCG00021900 |
NA
|
other |
downstream |
6242460 |
36650232 ~ 36659244 (+) |
Expression
Homologous
species |
gene id |
symbol |
gene type |
chromosome |
NCBI id |
location |
grasscarp (Ctenopharyngodon idella) |
CI01000054_07719547_07722201 |
C11H6ORF62, CUNH6ORF62, C3H6ORF62, CLG10H6ORF62, C12H6ORF62, C23H6ORF62, C6H6ORF62, C18H6ORF62, CLG22H6ORF62, C6ORF62, CSGR19H6ORF62, C4H6ORF62, C24H6ORF62, C2H6ORF62, CLG11H6ORF62, C16H6ORF62, BC005537
|
coding |
CI01000054 |
null |
7719497 ~ 7722271 (+) |