AMCG00021807


Basic Information

Item Value
gene id AMCG00021807
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30433927 ~ 30444924 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021807
gctgtattttaatgaaacatggAGGAAAAAATTTCCAAAATTGTCAACTTTCTTACAAATGGGGAATATCCACAAGGCTTCTCCAgatcacagaaacaaaaccttaGAAATTTGAGTGCCAAATTTTCTGTGGAAGATGGGAAGCTTTATCATATTACCAATGGTAAGAAGCGCAAGGTGTTAACGACGCTATTGGAAACACAAGACGTTTTCAAAGACTTCCACGTGTCTCTGGTGGGCGGCCACAACGGTATTGTGAGAACAAGAGAAGCGATTTCTTCACAATTTTATTGGCCAGGAATGTCCAAGGACATCGAGAGAATGgATCCAGTTAATTATTTCCACCCCATTACAGGATCCCTACTCCCCACATCGTTACACAGGACAATTCTGAAAGTGGGGGAGGAGCCCATTATACGAAGATGCACCACTTGCTGTAAACTATTTCACTGCCCATTCTGCAACATGAACCGGTTTAAACCAACTACGGAAAAACACGTGAAAAAGCATAtagatacacattttaaaaaggcgGCACGTTTTGAAGACTTCGTTATCTTTACATGTCGTTTGGGTTGTCGGGAAGCTGGGCAttttcactgtgttttctgtACGAAGACAACGTTGAGGAAAAAGACTGCTTTAATTCACCTTTCCATCTGCAAGAAGCGTGTGGTACAGACACTGTCTCAGCCTGCAGACTGCATCTCCAGATTTCAACCTCTGGAATCCATGGAGAATGATCCCAACGAAGACCTTTCACTGTTACCTATACCTGACACCGACAGCCTTGTTCACGCAGACTGGCCTGGGTGCAAAACTGAAGATGAACCCTCTTCAGATTTCCAGCTCAtgCTGGTTCCTGGACTGTCATCTCTTTTGCACCGACAGTACAGCCTCTCCATCTCCTCGGATTTGATCCGCACCCAGAGCTTCATCGGCGGTCGCTGGGTGTCCGCCCCCTCGTCCTTTCCCGTGGTGGATCCCGCAACGGGCACCGAGATAGCCTGTGTAACGGACTGCGGGCCCCGGGAAGCCAGAGAGGCCgaaaGAAGTGTGCTGCTGCGAAACTGGTTTGATTTGTTAGTTCAAAACAAAGAGGATCTTGCCAAACTAATAACTGCAGAGTGTGGGAAGCCGATGAAAGAGGCCCTGGGTGAAGTGACATACTCTGCCTCGTTCCTGGAGTGGTTTTCTGAAGAAGCCCGCCGTGTCTACGGAGACATCGTCCCCTCGCCAGCAAAGGACCGCAAGATCCTGCTGCTCAAACAGCCGGTGGGAGTAGCTTCAATCATAACACCATGGAACTTTCCCAGCGCGATGATCACCAGGAAGATTGGTGCAGCCTTGGCCGCAGGTTGTACAGTGGTGGTGAAGCCAGCAGAAGACACCCCCCTGTCTGCCCTGGCTCTAGCTGAGCTGGCTGCGAGAGCAGGGATCCCTGCGGGGGTGTTCAACGTGGTCCCCTGCTCCAGAGAGAACACGCCTGAAGTGGGGGAGGTCCTGTGCACCGATCCACTGGTGGCAAAGATCTCCTTCACTGGCTCCACTGCCACAGGGAAGATCCTCCTCAGACATGCTGCCGGCACGGTGAAGAAAGTGTCCATGGAGCTGGGGGGACACGCACCCTTCATTGTGTTCGACAGTGCCGATTTGGACCTCGCTGTGATTGGAGCCATGAACTCCAAGTTCAGGAACTCTGGACAGACGTGCGTGTGTTCTAACCGCTTCCTGGTGCAGAGTAAGGTCCACGACGTGTTTCTGGAGAAGCTGGGCAGGGCCATGGACAGAGAGCTGCGCCTGGGCCACGGCTTCGACGAGCAGACCACCCAAGGGCCGCTCATCAATGTCAGGGCGGCCGAGAAGGTGGAGAAGCAGATTGCTGATGCCGTGGCTCATGGGGCGTGTGTGCTGAAAGGGGGGAAGCGTCTGGAGGGCTCCTTCATGGAGCCAACCCTCCTCTCCAACGTCTCCACAGACATGATGTGCACCCAGGAGGAGACGTTTGGGCCCCTCATTCCAGTCATCAAGTTTAACACGGAGGAAGAAGCGGTCACTATCGCCAATTCATCGTCTGTTGGTTTGGCTGGTTACTTCTACTCTAGAGACTACAGTCAGATCTGGCGGGTAGCAGAGCAGCTGGAGGTGGGCATGGTGGGGGTGAATGAGGGGCTGATGTCAACTCCTGAAGGCGCTTTTGGGGGAGTCAAACAGTCTGGCTTGGGGCGAGAGGGCTCCAAGTACGGAATCGACGAGTATCTGGAAGTCAAGTACATGTGCTTCGGTGGGCTGTCTTGAGCCAGCGTCTCAGGTCGAGGTACATTCAAACGCCATTTAATCCGACAGATTTCAACAGTACTTGAACCAGGTATGCCATAACAGTCCACAACCTTTACGCATTCTACCATGTAATTAAACGTCTTTTCAGCCTCGTGGTTTCTGTAAGTACCTCTGAGACTTGTGATAACAGggccattttaaattaacttttgtttggCTGATTCAGTTAAAATAGAAGGTAAAGTAGATGCAGATGTTTGGATACTAATGGATagagtgaagaaaataacattcatccaaaacattaacaaatgtatttgaagaaGTGCTACAGAACAGGTCCAAGCAAATTTCAGAAAGTCAGCATATTATACTGTCCATTACTGGACAATTAAAGCACAATTTAACatcatgtgtgtatatatatacacatatatatatataccagaaTTTAaccagaaaattacattttatatgacATGCTTTTGGCTCTTTTTGACCAAATGAGAGATTCAGAAATGcttctgtattttctgttaaGTATAAGTGAGATGGAATGAAATTGAGTTAAATCTGGGATAGATTTCTTAGTTTGTAATTTCTAAACATTACGATGATTTGATAATGCGTCTCATTTTAAATCTACATTTCCTtgtcattaaacatttaagtaatgtaacaggttctgtgttttttcttagatatatatacattttaatctgtatAACAATCTTCCTGTTgtatgctaaaaaaaaaaaagaatattaagTGCCAGTGAAATGCAACATCTAATcttcaagttttgttttttactaaaaACATAAGTAGTTTATTGAAATGAGAAATTTGTGAAAGCTAGCTTATTTCCATTTCTGACTCTCTAATGAACATGCAGAAATGTCCCCGTCAAGTGCACAAACCTTCGTTCACTTTCCTTAGTTACATGTGAAAATTGTTTTCCAAATCCAGAATTGACAGTGCCATATATTATGTGTATTACAAATCTTGTTCTTAGCGGTTACGTTATATTGTACAAAGTGCATTTGTAACTGTTGTAAATAGATTCAATGTGgaataaaattgtaaaacagcacagataATGAGTGAATACTGTCCTACTTAATACtataataatgttgttgttcttatttttttttaaatctagtttGTGTCCAATTcccagcccccccaccacccactgCTGATAATGTCAGCCCTGCTGTTATATGTGACTTTTGAGATAACCACTAAATGTACTTAAGGTGCACTATATAGCTCTATGTAGAAATAAAA

Function

GO: NA

KEGG:

id description
K00139 ALDH5A1; succinate-semialdehyde dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021807 True 3573 mRNA 0.45 15 30433927 30444924

Neighbor

gene id symbol gene type direction distance location
AMCG00021808 NA coding downstream 5426 30426116 ~ 30428501 (-)
AMCG00021805 acot13,LOC102778390 coding downstream 38009 30394379 ~ 30395918 (-)
AMCG00021801 LOC107743838 coding downstream 47110 30381960 ~ 30386817 (-)
AMCG00021797 LOC106570559,LOC105012503,LOC102295214 coding downstream 148791 30284672 ~ 30285136 (-)
AMCG00021796 LOC105009370,LOC106588819,LOC100696657,LOC107596629,LOC102210154,LOC107685565 coding downstream 168473 30256031 ~ 30265454 (-)
AMCG00021806 NA coding upstream 17087 30462011 ~ 30469642 (-)
AMCG00021809 NA coding upstream 74077 30519001 ~ 30519513 (-)
AMCG00021817 NA coding upstream 254425 30699349 ~ 30707723 (-)
AMCG00021816 NA coding upstream 263901 30708825 ~ 30719230 (-)
AMCG00021818 NA coding upstream 285731 30730655 ~ 30741775 (-)
G88545 NA non-coding downstream 8375 30425304 ~ 30425552 (-)
G88435 NA non-coding downstream 486387 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 592388 29838518 ~ 29841539 (-)
G88347 NA non-coding downstream 1153054 29279361 ~ 29280873 (-)
G88245 NA non-coding downstream 1602703 28830158 ~ 28831224 (-)
G88562 NA non-coding upstream 80822 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 516779 30961703 ~ 30962096 (-)
G88736 NA non-coding upstream 1353828 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 1414485 31859409 ~ 31859833 (-)
G88762 NA non-coding upstream 1543850 31988774 ~ 31989050 (-)
G88527 NA other downstream 9315 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 691119 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 1362167 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 1650646 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 3514083 26899963 ~ 26919844 (-)
AMCG00021820 NA other upstream 432924 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 684659 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 1618461 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 3815080 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 3902064 34346988 ~ 34380295 (-)

Expression


Co-expression Network