AMCG00021816


Basic Information

Item Value
gene id AMCG00021816
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30708825 ~ 30719230 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021816
gATCAGTTGGGACCTAGAAACTAAGGAAGGGCGCAAGTGATTTGCAGTCGCGCAAGGGTCCACAAAAAGTTACATTTCTTCTGAGAAGAagccttattatttttttgtattgtctagtaattatttttattctacctcaaagtcttttttttattttttttagctgtTCAAGATTTCACCTTCCTGTTTACAAAAAGGCATCATTTGGAACCAGCAGGTCTTTGCACAAGTAGTCTGAACTATGAATGAACTTCACCATGCTTCCCTGAAATGAAATTGTACACCTATGCACTTTAGTACCTTGCCGGCTCCAAGTCTGAGTAGCTCGAGTAGCTTGAGTAGCTGACCACGAGAGATTCCAGTTGTCGGCAACGAGAGTGGACGTCGCAGCCCTAAACATTCGGCTCCCCTCCTAACGATGTTCCACAGATTCTCCAGCGTCCTCTTTGGAGATGCTGCTGAACAGAGAAACAATGGAGAGCCGGAGTTTAGTGAAAAAGAAGACGACGATGAATGGATTCTCGTCGACTATTTAGAAGCTTGCACTAACACCTGTGGAGAAGGAGCAGCGATTGTCTGCGCTCAGGACCCCTCTCCCCCTGACTGCCCAGCCCTgttctcctcctgctcctccctgGCATCCAGCATGGACCCTGTGGAAGCCGGCTTCCTCCAGCTGGAGTCCTGTGGCCTGGAGGAGAGCTGGTTCATCACCCCTCCACCCTGCTTCACGGCAGGAGGTCGGGCCCCCGTCCTCCTGGAAACCAGCCCCCTGGAAAATTTACTCATTGAACACCCCAGCATGTCCGTCTACACCGTTCATAACCCCCGTGCCAGTCTGAAGGACACCAACCGCAGGCCTTTAGACCAGTCCCTGCTCAGgattGAAGCACCGCATAGAATGGGCCAACATATTGGCTGCTATGCAGCTGCACTCTCAGCTCACACCGGTTTCCTTGAACAAGCCAAGCATGCCCGCCTTGCCCAGCGCACCAAGGACAATATAGAGAAGCAACGCCTGTCTCGCAGCTTCTTCCGCAGACAGAATCTGCTCAGAGATAGCAACTCTCGACAGGTCAAAAGCAGTGGAGTATTTGTGCATCAGCCTGCCCAAAGGCAGTTCAACTATTGACGTAGTGTTCTGTTCAGAGTTCACTCTCCCCATTTGTGACATGTCTTTCACAAAGATCCAACCAAGTCCTTTAAAGCTGATTGCGTAGGTCACTTTGCTTGGTGGCAGGTCTCTATCTGTATGTTTTTGCGGTGCCTGAAAGAAGATGCATGCTGGAACATTTGACACTTTTTCAGTGTTCTACATTATTGAAAGTGCCAGAGTTTCATTACATCCACAATAATGAGGCGAAAGTTATAGGAGTACTTttagagaaaaaactaaagggAGGTGATGGAGGGGCCTTGGTGGTACAGATAAGTTAGTTGTTTAACCAActgtttaaattgaatataaatgCAGATGATTTGTCTATTAACCAGGGAAAACCTCAAATGCTTCAAATTTCTTCCTTATTGTTTTTCCTATGGACACattctctgtgcttctctgttGTTTCTACTTGTAAAACATCTCGAAGTTGGAGGAAATAGTTTGGGAAAGTTGCCTTCATTAGTGTTGTATCATGGTACCATGTGCAACAAAAAGGCATGGTGTGAAACTCTTTTGCATTCACTATATTCTCGAATGTCTGTAAGCTTGAGACATTGGAACAGAGTTTGCAGAGCAAACAATTGAAGAAAAAGGATTAACAGAACATTTCTCATCATGGcaaagcaaaatattatttaatactgtttttttctacaaaatgcAACCTTCTAATGCTGATTTGTGATGTCTCCAAATTAGCCACTGCACCTCTGTGACTTAGCTAGAACCTGCCCATaactttataaattaatactttcaCACTATGTTTGACTTTCTTGAAACGCTGGGTTTTGTTCACTAAACGCCTTGTTTTAATCATGGACTTTAActgaagtatatttaaaaagataaaaattaaaataaaaacttacaaaaaatatttttaaaagacaaaaaaattaaatgcatatcaGTATGAAGTTCGCATATGAGAGTAtgctatatatgtatgtgtgaggCATTCTTAATGCTAGTGTGTTTTTGCATGGTTGTTTGCAGTTATTTACAGAAGggtagattattatttttttccaaaacctgTTTAATTATATCTTTCATAATTTGTTCTAAATTTGCAATACACTTCTCAGGGTCAGAACGGTTCACCTTTACACTTTATTAAGATGCAGATTACTTGATGAGCAGTTTATTGTCCTTGTATATAAACCTTCCAGATTTGTCATAGTGTAAGTGCATGAAATTGCCTTGTGGAATTGTTGTAGGCCTTAAAATGTGCGTATGTGTTTATCTTTGAAACATAAGTGAGACTTTTCCTTCTTGTGGGCCTGAGGACTGTGAAGAATGAATTGTACTTTCTAGCTCAAACTCAGTTGACTGTTAAAACCTGATGGAGGACAGTGCGTCACCtttcttatttcattttgtgtgtgttaatggcttaacatactgtatgtttCACGGTTgagatttatttgaaatgtgtagtttaaaatatatatattattttttcggTCTTTCTTTCCTGGCTGGGttatgtttgaaatatatttgttaaactatatttttaaaccaaaaaaaagtagCAAACCACTTAAATTCTACAGTAGGTCTATATTTtctaatggttttgtttttatattgtataatgtcatttaaaaatgtttttaaatagagaTCACAGGGTTTTATAAAGATAGTAAATCTGTGCAgcattaatctttttattttttatttttatttttctcagagGTTGGTGAGGAATGGAGTCAAACTAATATATCAAAATGTTGTGCCTATCCAAAATACAGCAACTCTTGGTAAAGCCTTTGAAACCCTGATGAAACTGTTACAAGAAATAACTTTGAAAGTCTGTTATCCTTTTAAATATAAGTAACATTTTGGGCATATGCCTTCTAAGTTGGTTGTAACCAAGTGCTAAACTTTTGATACTAACTGGGAAGTTGGATTTAGATGTTGTAATTTCATAGTTAACCTGTATGACGCACTAAGCTTTTGTGTTGATATTTTAGAATGTGTGAGTAAACATGCATATACAAGTACAGtggagtgtttttattttctgttgtattgtatttttttctaaccTTTAATCcagtaatgtttattttcagaattcatgtttgtttctgtattctATCTTTACTGCATTGTTTTATGGTGTGGGCAAGAGAGACGGATGGGAATTGACGAGAACATTCAGACCCTTGCTTTTTGGTGTTGAATGCTGGAAGGAATGTTCTCGGTTgtcttttttaaacatgtataaataacagggattttttttgcatttcattttgttgtggACTATGTGCCTTCCAACAGTATGacaatgcatttataaagaACTTGAactcaacacaaacaaaaacaaatcaactatgcacaaaaggTAGCTTGTTCCCTGAGCCACTTATCTGtacagcttttatacacaaatgtagcatttttttttttcctgtgaagAAAAATGGTTTGTTAATGGCGTTTCTCACCAAGTGTTAGGCTTTGCTTCTTTGGATATAGTTTACTGGAATAATACAGCACTTTGCCAAAAGAAGTGTAGGATTGTTGTTTagcatttacaattatttatctATGTAACTGATCTCATACTTGTCTGttcagatacaaaataaaaaatgtgcagtttgcactttctgaaacaatgtttttttttttatagtcaGAAAAATGTGCAAGTGGAAAAAGAGGTAGTGTGTTTCATAACTGTAACctttttaacatgatttatGTACATTGTGTAAACAGCCAGTCTTCAATAAATGTACCTTCTCATAAAACTTCTgagtatattttcattaatttgattGGTAAATCTGTATAGTGACCAGCTGTTTAAAGACTATTGGTGTTCACAACTAATGTTGAAGTATTAATA

Function

GO: NA

KEGG:

id description
K15310 TP53INP1; tumor protein p53-inducible nuclear protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021816 True 4046 mRNA 0.38 4 30708825 30719230

Neighbor

gene id symbol gene type direction distance location
AMCG00021817 NA coding downstream 1102 30699349 ~ 30707723 (-)
AMCG00021809 NA coding downstream 189312 30519001 ~ 30519513 (-)
AMCG00021806 NA coding downstream 239183 30462011 ~ 30469642 (-)
AMCG00021807 NA coding downstream 263901 30433927 ~ 30444924 (-)
AMCG00021808 NA coding downstream 280324 30426116 ~ 30428501 (-)
AMCG00021818 NA coding upstream 11425 30730655 ~ 30741775 (-)
AMCG00021819 NA coding upstream 48504 30767734 ~ 30768744 (-)
AMCG00021823 gdf6a coding upstream 281756 31000986 ~ 31028447 (-)
AMCG00021827 ebag9,LOC107666870,LOC107705161,LOC107600620 coding upstream 323301 31042531 ~ 31051184 (-)
AMCG00021829 NA coding upstream 338829 31058059 ~ 31093370 (-)
G88562 NA non-coding downstream 146025 30525746 ~ 30562800 (-)
G88545 NA non-coding downstream 283273 30425304 ~ 30425552 (-)
G88435 NA non-coding downstream 761285 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 867286 29838518 ~ 29841539 (-)
G88347 NA non-coding downstream 1427952 29279361 ~ 29280873 (-)
G88643 NA non-coding upstream 242473 30961703 ~ 30962096 (-)
G88736 NA non-coding upstream 1079522 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 1140179 31859409 ~ 31859833 (-)
G88762 NA non-coding upstream 1269544 31988774 ~ 31989050 (-)
G88795 NA non-coding upstream 1375472 32094702 ~ 32094939 (-)
G88527 NA other downstream 284213 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 966017 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 1637065 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 1925544 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 3788981 26899963 ~ 26919844 (-)
AMCG00021820 NA other upstream 158618 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 410353 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 1344155 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 3540774 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 3627758 34346988 ~ 34380295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_00456765_00460615 TP53INP1 coding CI01000016 null 454828 ~ 461209 (-)