AMCG00021820


Basic Information

Item Value
gene id AMCG00021820
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30877848 ~ 30888588 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021820
GGCAGTAGTCGTGGCCGAGTGGTTAAGGCGATGGACTAGAAATCCATTGGGGTCTCCCCGTGCAAACAGCCGCATTCACCCATTGATGAGTCAGCTGCAGTTTCGCTTGGCGTGTCTAACGCTTTCCGTGCGCGCCGCCGTGCTTCCAAGCAGGACGTGCGCGCTCACGCCCGACCCCGGGGTGCGCATGCGGGCTGGCGCGGCTCGGCCATGGCGGAGGACCTGGACGCGCTGCTGGACGAGGCGGAGAGACGCTTCTGCTCAGGCGCCTCGTCCGCCGCCAGCCGCGGGCCGGGAGACAGCGGCGCTGCGGTGAAACcgggggagaggaggaagaagcagcgCACTTCACCCAAACGATATGAGGATGAAGACATAGATGACCTCATTGAAGACCTGTTTGAAGATGAGTTTGAACCTCTTAAAGTGCGAAATaaacctGGAGGAACAAATTCCGATGTCAGCAATTCACCCTCTTGCCTAACAAGCAGAAAaaACAACATGCCTGACTGTCAAAAGCTAAAAGCCAAGCTGCTAAGAAAGAGGGGGACGCGAGCCTATGCCTGCCAGTGTAGCTGGCGCTCGGTACACAGCCTGACAGACCTCAGAAGAGAACAGGAGCTCAAGTGGGTTTGTGGCAAACATGAGACATGAACAGATGTACTTTAAAACAAGAAGTGTGCGTTTTGTGATCATTGTGTTCAAGTGTAAGTCTCTAGTTGTCACAGTTCGTGATCTGGGTTGGTAAAAGCTATACTATAGTACCTCTCCTGCcattcattacacacacactcagtggccactttattagctACACCTGCTTgttaatgcaaataaaaccgCATATCATGACTGCAACTCAACTGAGGTTTAGTTGTTCGACCAAACATTAGAATGGGGAAGATGTTGATCTAAATGCTAAACGTTTGTCAAGCTGTTCATTTGGTATCTgctatattataaattaaatgtaaaatatccaTGACCACTTTTTGACCACCATCAACACAGGAGAATAATTGGCAGGGGAGAGTGCAAGTAAGCAATCACACTTTCCGAAAAATAAGAGGCAATCTGCAGCAATCACTTTGATCGCCTACACTGGTTTATATAAACTGGGTAATGCACAGTcagtaatgtatgttacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagcaaCTCAGTACAATCTACACAAAGTAACATCCTATGCTGTCTGTACAGCTcctacaaataatacattgtatgaCCACCATAGATATTATTCCTTATCGAGTTTAGTcccaactgaaatgaaaactttCACTTAAAtggaacaaaagcacacaacaaaaaacaagctaGGCACGAATTTGTTACGCTTAATTTCCGCATTAATAACAAGAACCAGTATATCTGTGAAAACATGGTATGAGAAAACACCCACATAAAATACGAACTTAAAAACAAGCGAAGCGGCAAAATAATACCTTgtcaaaaatatgcaaaacacatttgatagcatactgaaattaaatgtttttattcagaatAAAGCTTAAAGctgtaatgttgttgttgttgttttttccttcgaAAAAAGCCACTTGAGTGTCACAACAGCATTAGAGGGCAATTGCCAAAAATATTTACACTTAACTATACTCTAAAAGGTGTATTTCATAGTTTTCAAAAGGTATATTTTTGCTGCGttgcaggttttcatttttcacgTGGGTGACGCATGTTTTTACTGATATATTGGATCTTATTATTAATGTGGAAATTGAGTGTAACATAGAAACAATctaccttttttttgttgttttgcgtTGTGTGGTTTAGTTTCTGCTTAGGTACCTACAGAAGTGAATGTTAATTTCACTTTGGACTAAACCTGATCAGCAGAAATATCTACGAAGTGGTCATccaatgtattataatttgtagGTGGCCTAATCACCTCAGACTAATGTGTTGGGACAGCGTTTATCtcccattatttggtaagttttcaATAGCTGCTTATATGATGGACTATATCTGAAAGAGTCGGACCTTTCATTCAACTACactaattgtgtttgtgttgcctGAGCAAGACGAATGGACATGAGTTAATAAAACTAGAAATGttgatttacatttgtacaaagaaatatacaaatctaaacagagttttatattaacatttttaaacaatgtgtatTGTCTTCTAAAAAGCAGGGgcctttaatttgtgtttatcaAACTTAAATCATCAGTATCTGGGTGTCTGaattttaaagaatgtatttgATCATATTATCTTATGTCACTTCAGTTAAGTGTACCGTCTTATGTCCTTACAGCACACATTACCaggcatcttttttttttttgggggggggggg
>TU110615
CGCGGCTCGGCCATGGCGGAGGACCTGGACGCGCTGCTGGACGAGGCGGAGAGACGCTTCTGCTCAGGCGCCTCGTCCGCCGCCAGCCGCGGGCCGGGAGACAGCGGCGCTGCGGTGAAACcgggggagaggaggaagaagcagcgCACTTCACCCAAACGATATGAGGATGAAGACATAGATGACCTCATTGAAGACCTGTTTGAAGATGAGTTTGAACCTCTTAAAGTGCGAAATaaacctGGAGGAACAAATTCCGATGTCAGCAATTCACCCTCTTGCCTAACAAGCAGAAAGTAAATTAACCTTGCAATTTTGGAgattaagaaaatgaataccACATTCTGATGAGCCTGTCTGACATGTAAGGTTATTTTTCTTACAGGTGTTGTCCAGTTTTTTTAGGAGGCAGTTCTGTACCATCTGGTGTAGGAACGAGCATTTCACAAAGGGCATGTAGCCGTTTGCGATGCACCTCCTGCGATTTCCGTCTTGCAACATTTGATGATCATGAGTGGGACCCTTCttgtgattatttgttttttagaaACAACATGCCTGACTGTCAAAAGCTAAAAGCCAAGCTGCTAAGAAAGAGGGGGACGCGAGCCTATGCCTGCCAGTGTAGCTGGCGCTCGGTACACAGCCTGACAGACCTCAGAAGAGAACAGGAGCTCAAGTGGGTTTGTGGCAAACATGAGACATGAACAGATGTACTTTAAAACAAGAAGTGTGCGTTTTGTGATCATTGTGTTCAAGTGTAAGTCTCTAGTTGTCACAGTTCGTGATCTGGGTTGGTAAAAGCTATACTATAGTACCTCTCCTGCcattcattacacacacactcagtggccactttattagctACACCTGCTTgttaatgcaaataaaaccgCATATCATGACTGCAACTCAACTGAGGTTTAGTTGTTCGACCAAACATTAGAATGGGGAAGATGTTGATCTAAATGCTAAACGTTTGTCAAGCTGTTCATTTGGTATCTgctatattataaattaaatgtaaaatatccaTGACCACTTTTTGACCACCATCAACACAGGAGAATAATTGGCAGGGGAGAGTGCAAGTAAGCAATCACACTTTCCGAAAAATAAGAGGCAATCTGCAGCAATCACTTTGATCGCCTACACTGGTTTATATAAACTGGGTAATGCACAGTcagtaatgtatgttacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagcaaCTCAGTACAATCTACACAAAGTAACATCCTATGCTGTCTGTACAGCTcctacaaataatacattgtatgaCCACCATAGATATTATTCCTTATCGAGTTTAGTcccaactgaaatgaaaactttCACTTAAAtggaacaaaagcacacaacaaaaaacaagctaGGCACGAATTTGTTACGCTTAATTTCCGCATTAATAACAAGAACCAGTATATCTGTGAAAACATGGTATGAGAAAACACCCACATAAAATACGAACTTAAAAACAAGCGAAGCGGCAAAATAATACCTTgtcaaaaatatgcaaaacacatttgatagcatactgaaattaaatgtttttattcagaatAAAGCTTAAAGctgtaatgttgttgttgttgttttttccttcgaAAAAAGCCACTTGAGTGTCACAACAGCATTAGAGGGCAATTGCCAAAAATATTTACACTTAACTATACTCTAAAAGGTGTATTTCATAGTTTTCAAAAGGTATATTTTTGCTGCGttgcaggttttcatttttcacgTGGGTGACGCATGTTTTTACTGATATATTGGATCTTATTATTAATGTGGAAATTGAGTGTAACATAGAAACAATctaccttttttttgttgttttgcgtTGTGTGGTTTAGTTTCTGCTTAGGTACCTACAGAAGTGAATGTTAATTTCACTTTGGACTAAACCTGATCAGCAGAAATATCTACGAAGTGGTCATccaatgtattataatttgtagGTGGCCTAATCACCTCAGACTAATGTGTTGGGACAGCGTTTATCtcccattatttggtaagttttcaATAGCTGCTTATATGATGGACTATATCTGAAAGAGTCGGACCTTTCATTCAACTACactaattgtgtttgtgttgcctGAGCAAGACGAATGGACATGAGTTAATAAAACTAGAAATGttgatttacatttgtacaaagaaatatacaaatctaaacagagttttatattaacatttttaaacaatgtgtatTGTCTTCTAAAAAGCAGGGgcctttaatttgtgtttatcaAACTTAAATCATCAGTATCTGGGTGTCTGaattttaaagaatgtatttgATCATATTATCTTATGTCACTTCAGTTAAGTGTACCGTCTTATGTCCTTACAGCACACATTACCaggcatcttttttttttttgggggggggggggtccacGTGAATGCAAACAAGcatctgtttatttgtaatatacttgcaatttactgtaaatgttttctgcattgatggcTTTTATGATTGTCTGAATATAATAATCtaagatattaaataaaaaataatacttaattgAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021820 False 2383 mRNA 0.41 5 30877988 30888588
TU110615 True 2576 TUCP 0.39 5 30877848 30888212

Neighbor

gene id symbol gene type direction distance location
AMCG00021819 NA coding downstream 109104 30767734 ~ 30768744 (-)
AMCG00021818 NA coding downstream 136073 30730655 ~ 30741775 (-)
AMCG00021816 NA coding downstream 158618 30708825 ~ 30719230 (-)
AMCG00021817 NA coding downstream 170125 30699349 ~ 30707723 (-)
AMCG00021809 NA coding downstream 358335 30519001 ~ 30519513 (-)
AMCG00021823 gdf6a coding upstream 112398 31000986 ~ 31028447 (-)
AMCG00021827 ebag9,LOC107666870,LOC107705161,LOC107600620 coding upstream 153943 31042531 ~ 31051184 (-)
AMCG00021829 NA coding upstream 169471 31058059 ~ 31093370 (-)
AMCG00021831 NA coding upstream 204820 31093408 ~ 31108646 (-)
AMCG00021826 NA coding upstream 333395 31221983 ~ 31225381 (-)
G88562 NA non-coding downstream 315048 30525746 ~ 30562800 (-)
G88545 NA non-coding downstream 452296 30425304 ~ 30425552 (-)
G88435 NA non-coding downstream 930308 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 1036309 29838518 ~ 29841539 (-)
G88347 NA non-coding downstream 1596975 29279361 ~ 29280873 (-)
G88643 NA non-coding upstream 73115 30961703 ~ 30962096 (-)
G88736 NA non-coding upstream 910164 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 970821 31859409 ~ 31859833 (-)
G88762 NA non-coding upstream 1100186 31988774 ~ 31989050 (-)
G88795 NA non-coding upstream 1206114 32094702 ~ 32094939 (-)
G88527 NA other downstream 453236 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 1135040 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 1806088 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 2094567 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 3958004 26899963 ~ 26919844 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 240995 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 1174797 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 3371416 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 3458400 34346988 ~ 34380295 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 3490113 34378701 ~ 34388010 (-)

Expression


Co-expression Network