AMCG00021823 (gdf6a)


Basic Information

Item Value
gene id AMCG00021823
gene name gdf6a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31000986 ~ 31028447 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021823
ATGTGGCCGGGCTGGGGCAGCTCGCTGCAGCGCCATCCTGATGCAGTCCTGACAGAGAGGGCTTGGCTCGGATCGAGGGTATCAGTTGACTGCAGGGTGGATATCTCAGACTTCAGCAAGGGCTTTATTGGAGCAGCCAATGAACAGACAGTGACCATGATGGGACTTTTCAAGGCGCTAGCTGGGAAAAGCCTGCCTCATCCGTGTGAAGGGTCCATGTCCTGTCCTAACAGCGCAGTGGAGTCAGGGTACAAGTTCTCCAATAAATACATGAGGACAGAGCCGGGGGCGGTCGCGCTGGTCTGCGGAGCGCACTTTCTTTTGGCCGTGAAGTCTGCAGTCTCTAATCGCTGCCTGTCTGTAAGCGATCACACCGGTGTCACTGTGGAGAGCGCTTCAGACTCACTTTTGGACACTATTGCCATGGATGCCTTCAGAGCTGCTGTCTTTTTCCTATTTATTCTCTGCTTTGGGGATTTACCTTGTTTTCATTCCGCTGctattttctctccctctctcccgaGGAGCAATAAGGGAATCAGGATCCTAAATGATGGGAAGAAGGCACCCACATTTCTGAAAGAAATGATCTCCTCCACCACAAGCCAAAGCCATCACCCAGATGCCTTTAAAGACGCCATTGTACCCCACGATTATATGCTGTCTATTTATAGGACTTACTCTGCAGCGGAAAAGCTCGGGATAAACGCGAGTCTTTTTCGCTCTTCAAAGTCTGCTAACACCATAACAAGTTTTGTGGACAGAGGACAAGACGATCTCTCGCCCTCTCCTCTGCGAAGACAAAAGTATCTCTTTGATGTCTCCACTCTCTcagacagagaggagatggTGGGCGCTGAATTGAGGATATTTAGACAAGGGCCTGGGGATGTCCAAATGTCCCAGACGGGTCTCTATGTCCTTCACTTGCTCCCCTGTCGATCAGAGCGGGTTCGACTGGATTCGAGATCTATCGATGTCCACGACTCTCAAAGACCAGGGTGGGAGGTTTTCGACGTGTGGGGGATGTTTAAAAACCGTCACCCCTCTGCACCCCAGCTCTGTTTTGAGCTTAAAGCCACCTTGGGTAAAATGGAAAGGGAAATTGACTTGCGACAAATCGGATTGGGTAGAAACGATCGTTTCCAGCAGGAGAAAGCGATTTTGGTGGTGTTTACACGGTCCAAAAAGAGGGAGAATCTGTTCAATGAGATGAAAGAGAAAATCAAGTCTTCTCGGAAGGCCGAGGATGAGGGCACGTTTCAGTTCAAATCGAGGAGGAGACGGCGGACGGCGTTCAACAACCGGCACGGCAAGAGACATGGGAAAAAGTCCAAATCCAGGTGCAGCAAAAAACCATTACATGTTAATTTTAAAGAGCTGGGGTGGGATGACTGGATCATCGCCCCCCTGGATTACGAGGCTTATCATTGTGAAGGTGTGTGCGACTTCCCTCTGAGGTCGCACCTGGAACCCACCAACCACGCCATCATCCAAACCCTGATGAACTCCATGGATCCCAACTCAACCCCACCGAGCTGTTGTGTGCCCACCAAGCTCAGCCCCATCAGTATACTGTACATTGACTCGGGCAACAACGTGGTCTATAAGCAGTACGAAGACATGATAGTGGAATCGTGTGGCTGCAGGTAG

Function

symbol description
gdf6a Involved in retinal cell apoptotic process. Acts upstream of or within several processes, including blood vessel development; camera-type eye development; and regulation of signal transduction. Is expressed in several structures, including blood vessel; digestive system; fin; immature eye; and nervous system. Used to study microphthalmia. Human ortholog(s) of this gene implicated in several diseases, including Klippel-Feil syndrome 1; Leber congenital amaurosis 17; cleft lip; isolated microphthalmia 4; and multiple synostoses syndrome. Orthologous to human GDF6 (growth differentiation factor 6).

NR:

description
TGF-beta=transforming growth factor beta/Radar product

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0001895 retina homeostasis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process

KEGG:

id description
K20012 GDF6; growth differentiation factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021823 True 1653 mRNA 0.51 5 31000986 31028447

Neighbor

gene id symbol gene type direction distance location
AMCG00021819 NA coding downstream 232242 30767734 ~ 30768744 (-)
AMCG00021818 NA coding downstream 259211 30730655 ~ 30741775 (-)
AMCG00021816 NA coding downstream 281756 30708825 ~ 30719230 (-)
AMCG00021817 NA coding downstream 293263 30699349 ~ 30707723 (-)
AMCG00021809 NA coding downstream 481473 30519001 ~ 30519513 (-)
AMCG00021827 ebag9,LOC107666870,LOC107705161,LOC107600620 coding upstream 14084 31042531 ~ 31051184 (-)
AMCG00021829 NA coding upstream 29612 31058059 ~ 31093370 (-)
AMCG00021831 NA coding upstream 64961 31093408 ~ 31108646 (-)
AMCG00021826 NA coding upstream 193536 31221983 ~ 31225381 (-)
AMCG00021828 LOC107600623,LOC107666844,LOC107551188,LOC105905365,LOC107705775 coding upstream 282139 31310586 ~ 31350368 (-)
G88643 NA non-coding downstream 38890 30961703 ~ 30962096 (-)
G88562 NA non-coding downstream 438186 30525746 ~ 30562800 (-)
G88545 NA non-coding downstream 575434 30425304 ~ 30425552 (-)
G88435 NA non-coding downstream 1053446 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 1159447 29838518 ~ 29841539 (-)
G88736 NA non-coding upstream 770305 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 830962 31859409 ~ 31859833 (-)
G88762 NA non-coding upstream 960327 31988774 ~ 31989050 (-)
G88795 NA non-coding upstream 1066255 32094702 ~ 32094939 (-)
G88831 NA non-coding upstream 1663824 32692271 ~ 32692496 (-)
AMCG00021820 NA other downstream 112398 30877848 ~ 30888588 (-)
G88527 NA other downstream 576374 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 1258178 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 1929226 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 2217705 28781802 ~ 28783281 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 101136 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 1034938 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 3231557 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 3318541 34346988 ~ 34380295 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 3350254 34378701 ~ 34388010 (-)

Expression


Co-expression Network