AMCG00021827 (ebag9,LOC107666870,LOC107705161,LOC107600620)


Basic Information

Item Value
gene id AMCG00021827
gene name ebag9,LOC107666870,LOC107705161,LOC107600620
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31042531 ~ 31051184 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021827
GTGGTGTGACTGCGAGGGTGATGTTTCtcttgcatttaaaatggaaaggcAAACTAGTTAGCAGAATTTAGCAATAGATTGGTGCAGGCTGTCTGTGGTACAGACATGAAACTGGTTGAACACTGTTTATTGCCTGCGACGGACATAGAGTGCAGATTTGATTGATAAGTGCCAGCTGGTCACAAATTTGGAAAAGCCACATCTGGTTGGATAAATACCTGGACAGGGCTTGCGATCTGTCGGGTGTAATTTCCACTATGGCTATCTCTCAGTTCCGCTTATTTAAGATTTGCACATGCCTCGCAACTATTCTCTCCTTctttaaaagattaatatgCAGGTCTGGAAGATTACGAAAACTAAGTGGCGACCAGATCACTTTGCCAACAACGGTGGATTTTTCCTCCGTGCCCAAAGAGccaGAGATAGAAGAATGGAGTTCCTGGGATGAGGATGCCCCCACAAGTATTAAGATTGAAGGAGGGAATGGTACTGTGACCCCCCAACAAAATGACACTGAGACAGATGAGCCTGACTATTTCAAAGACATGACCCCCACCatcaggaaaacacaaaaaATTGTCCTTAAGAAGAGGGAGCCACTAAATTTCATTGTGTCTGATGGTAGTGCCGGATTCTCCAGCAGGCTAGCAGCCACACAGGATATTCCTTTTAACCAGCCTTCTGCTGAATTGGGGGATTTAGACACATGGCAGGAAGATTCCAACGCGTGGGAAGACGAGTCTGATGCTGCCTGGGAAGCTGAAGAAGTTTTAAGGCAGCAGAAAATGGCAGACAGGGAGAAAAGGGCTATGGAACAGCAAAGGAAGAAATTGGAAAAGGAAGCCCAAAGACTAAcaaaaaaggaacagaaaattGCTGTAAAGCTTTCATAACATTTAAGGATCATGGACATGCTGTAAGCCAGAAAAATGCCGCAATTCCGTAATATGTTTCTGTAGAATAATGATTCCTGATGAGTTACTGTTCATTCCCCCACAACCCcttgcatttttaattccaCCACCAACTATTATTTGTGTCATTTCTGGTGTCTATAGAGctaggtttattttaaatttgagcaTTTTTCTGCTGCAGCCATTTTCAGGAACTATTGTACATTTATTCAAATGGACACTTGAAGAACTGGATTGcgttttcttatttataaagCTTGAGACAGGAgattaataatgtttaattcagTCTAATTGAGTTTCATGGGAATTTCATTATCACTTTACTGAGTTACcgtgcttttaaaataaaaactttttatttcattttatttaattttgtttaaatttctCCATCGTGTCCATGTAAACAACTGTAAGACACTGGATTTCACAGAATATGGTGAGTTTTTtcagtgtaaataaaaacaggctAACCGCATTCTTCAGGTGACTGACAGTGTTTGAGGGTGGTGAGTGTAAATAAACTGTctggtttaatgttttaaaaatatccagGAAATATTCTGTAAAATGCTTGCTCTTATTAATACtcttaaacaaatttaaaaagtaaatcacCATGTCTAAACTTCTACTATAGTCACTTCTGTATATAGAAATGAGTTTCTAGACCctgtgattatatattttattaaagactATAACCACACATTCTGTGCTGAAAAAATCCTGCAAACTTAATATTAAGGAACTCGGGGAGCCTTGAAAGCTACTTAACACTAGATTTAAGACTTTTAGTCAGccaaaattattcaaatatctGGTTTCCAAAAGAAAGTTGTGTGGATGTTAGACAAgatggtttatattttatattctcatATGAAGACCATTTAGGCTAAATAGACTGAATTATCAACCTCCATTTATAGGAGTTTCCAATGGATTCCCGCCTTAATCAGAAAGATTTGACTAAGGCTAGACTGACCTCCTTTTCTCTTTGATCATTGACTTCTCTCTAAGATGGCTTGCAGCCAGATACCTGATATTTACCCTCCATTGTATGCGTGTTGAgttcttgtttctttaatataattgtCTTCAAGAGGAATTGTGAACTGCAGGACATCTGGTTTGTAGTCACAGATGAGTGAAACATCAACCTGCATTGATAATGAATGTGCTATTTCAGTTATTAAAGAAACCCAGCCAACTGCTTATACACAAGGGCAACAAATACACAGtattgaaactgaaatgcattaataaatatatataaaagtgaaatCGGTTATCTCAAAAATTTACAATAGTCAATACTTCATTTTTTGGAATTGAACACAAAATACTGTTACAAAGAACTTTGACAGAAAAactgttattttcattgtttcaggGGACTtgcctttttaaattttaaattctaGTTACAATAAAgtgacaaattaataatttagtttatatttttcattttcaataatgtGTAAGTTTTGTAAACTACTATTGGATGTGGTTTTTGCACATTCCTTCCTTATCTGTATGGCAATGGCAATGTTTCTCGAGTCACATTCTCATGTTCAGAATGTTGCAATTCTACCATTAAGTGTAGATTGGAAACAAACTTTAATTTCTGACCTCGTGGCAGTAATGGAAACCTagctataaaacaaagaaacttcGATATAATCTTtccataaaaatatatgaattggAAACTATTTTCATGTCACCTAAAATCTTTGATATTGTATATTGATTCCtgtcattatatttttacacatttccaACATACGTGTATAagatattattttctattaatgtaAGAACATTTTAACTTAGAACAATACAGTTTACATTGTGTAAATCATAAAGATAAGTTCACTAGGTTAGGAATAACATGGTATTTCAAACATAATCCCCATGAAATAAACTATGGTACAAAGAGCATTACCgttattgtcatttttaaataaataagggtCTTTCAGATTCTGTAAGATTGCATAGCAAGTCCTCAGAGCATGTAACTGTTCAAATGCATGCGTATTTGGCTTTGTTAGGCTTTTTTGTTTGAACTTCTTttaataagtgtttttattgcactaagaataaatgtaactgtaatgctaacaacacattttattcaaaacactaactacaatttaaaaaacaatatgttgCTTGATACTTTTATTTTGACTCGCACTATTTCTAAATGAATAACACTAAATagctaaata

Function

symbol description
ebag9 Predicted to act upstream of or within apoptotic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in secretory granule. Human ortholog(s) of this gene implicated in breast cancer. Orthologous to human EBAG9 (estrogen receptor binding site associated antigen 9).

NR:

description
PREDICTED: receptor-binding cancer antigen expressed on SiSo cells

GO: NA

KEGG:

id description
K22455 EBAG9; estrogen receptor-binding fragment-associated gene 9 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021827 True 3163 mRNA 0.35 7 31042531 31051184

Neighbor

gene id symbol gene type direction distance location
AMCG00021823 gdf6a coding downstream 14084 31000986 ~ 31028447 (-)
AMCG00021819 NA coding downstream 273787 30767734 ~ 30768744 (-)
AMCG00021818 NA coding downstream 300756 30730655 ~ 30741775 (-)
AMCG00021816 NA coding downstream 323301 30708825 ~ 30719230 (-)
AMCG00021817 NA coding downstream 334808 30699349 ~ 30707723 (-)
AMCG00021829 NA coding upstream 6875 31058059 ~ 31093370 (-)
AMCG00021831 NA coding upstream 42224 31093408 ~ 31108646 (-)
AMCG00021826 NA coding upstream 170799 31221983 ~ 31225381 (-)
AMCG00021828 LOC107600623,LOC107666844,LOC107551188,LOC105905365,LOC107705775 coding upstream 259402 31310586 ~ 31350368 (-)
AMCG00021848 med30,LOC107706236,LOC107754270 coding upstream 960258 32011442 ~ 32018134 (-)
G88643 NA non-coding downstream 80435 30961703 ~ 30962096 (-)
G88562 NA non-coding downstream 479731 30525746 ~ 30562800 (-)
G88545 NA non-coding downstream 616979 30425304 ~ 30425552 (-)
G88435 NA non-coding downstream 1094991 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 1200992 29838518 ~ 29841539 (-)
G88736 NA non-coding upstream 747568 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 808225 31859409 ~ 31859833 (-)
G88762 NA non-coding upstream 937590 31988774 ~ 31989050 (-)
G88795 NA non-coding upstream 1043518 32094702 ~ 32094939 (-)
G88831 NA non-coding upstream 1641087 32692271 ~ 32692496 (-)
AMCG00021820 NA other downstream 153943 30877848 ~ 30888588 (-)
G88527 NA other downstream 617919 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 1299723 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 1970771 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 2259250 28781802 ~ 28783281 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 78399 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 1012201 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 3208820 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 3295804 34346988 ~ 34380295 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 3327517 34378701 ~ 34388010 (-)

Expression


Co-expression Network