AMCG00021831


Basic Information

Item Value
gene id AMCG00021831
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31093408 ~ 31108646 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021831
tttgcCCAGGCAAACCAGTTTAACTTCGGAGCTGGCAATGACAATCTTGGCAACTTAGTCCAGTTAGTTTCTGATACAAGGTCTATCCCATGCGATGTGGAAAAGGATTCAAGCCATGCACAGATGATAACATGCTATACCAGAGCAATGCCCGAAGACAGTTACGTTGTCCAAGTCAGCGTGGATGGAGTGCAAGTCCCTGAAAccTGCACATTACCGGACACCTTTGATTTCAAGTTTAAGCCCTTCAACTGGTTTGCCagagtTTACATTGGAGGAATGCCTTGTGAACTTCTACAACCAAATTCAGACATTCGGTATGGCCTCACATTAGACTCACAGTATAGTACCTGGGGGACAATGATTTGCAAAATGACAGGAACATATGTGGGACATCACAATTTGAGTTTCATTCTGGACAGTGAATTTGGAAGgAGCTTGCCTGACTTGACGCTGTATACCACTTCTTCTTTGAACAAGCTAACTATGTTTCAGAGTTATGCAGAGGTCATTGGAGTTTCTCCTTCCGCGGGCAGCTTACAAGGGGGAACAACCCTGACCATATATGGCCAATACTTTGATGAGACGGACCAGCCAGCACAAGTTCTGGTTGGAGGTGGCAGGGGTCTGAAGCTGGAGGTGTGGAACAACAGTATACCCAACACACTGGATATGGCTATGAATTACAATGCAACCCGGCCTGGCTACTCTGTTACCTGGGTGGATTCCCTGTCCTACAAATGGGCTGATgcatttgacttttttgttgCCAAACTCAGTGGCTTCATAGTCCCCTCAGAAACAGACAACTACTGGTTTGCGGTCAAAGGGGATGACCGCTTTGCACTGTACTTCAGTAAAACTGGAAGTCCTAGTGACAAGGTCAAGATTGCTTGGGATTACTTCGTGCACTCAGAAGTGATGCATTTGCAGGAAGGCAAAGCGTACTATATTGAAGTATGGCTACAGGAATATGCAGGTGTAGCCTTTGTAGATGTTGGCATGTTTAAAGGGAAAAGCTCCTACACCCCACAGCAAACTGCTGAAGCGGTCAACGAGGTTCAACTCATCCAAACAGTGTGCAACAATTTACAAGAAAAGCAGTTTCTGAGACTTGAAAACTGGTCAAAGGGGAATCCAGTGAATGAAGTTCAGAAGGTCACTGTTACCAGCAACTGCACCAGCTCAGACACCTGCTGGTACTCCTATAGACTCATCTATAATTCAGAGAAAACAGCACTGCTTTCCGCGGATGCTTCAGCCGAGCAAattcagaatgtgttaaatGCTCTTTGGTCAATCAAGCCAGATACTGTCCAAGTGACAAAAGTGGACTTAAGTCAAGGATCTGAATATACTGTGACCTTCAACTCACAAAGAgGTGATTTTGAAAGCCTTCAGTATGAGACTTCTGACACTGATGTTAACATCACTGTTGTGGAAGTAACTAAAGGACAGCCCAGTCTAGACACTTTCACAATCAATTGGGATGGGATGCTGTCCAGACCTGTGAGTGCCACTGCATCAGCCACAGAGTTAGGTTACCCGAGTGGAGAGCTTGTCTCAGATTCTGAAGCCTTTTGCGGACGATATTCTCTCAGGAATCCATGGCTTATTTTCAGGTCAACAGACATCCAGGAATCTGGCTCTCCCTATAGAGACATCCCACTGCAGCTGTACAGTATGttttgctttgcATACAAAGGGATTCTGCAGAATATTGTTCAGGTTACGTTTTCttacacaaacactgaaaacGTGATGATCTATACATCCTTTGTGATTCCAACCACTTTTGCCCAAGGAGACGAGTGGCAATACACCTGCATTGATCTTCTGAGTCCTTTGAAAACATCAAACCCTGGAACTGCATATATGCTTCAGTACCTGTATCTCTTCAAGGTGCCATCAAATCAAGATTTCTATGTTGATGCAGTCTACATTGGAAGAATGGCTGCAACATCAACTTTTAatgATATTACAACAGAGAGAAGACCCCCAGCACTGGCCCAGAGAGGTATTTTTCTACAGGATATCATGGTGAACAAGATCCAGGAACCAGCAATATCAAATGCGAGCTTTGAAATCACAGTGACTCCTTACTACTGTGGGTATGATTTACCTTTGCTGGCCATTGCGTTTGCACAGGTTTTTTCCAACGGAAGTACAGAAGAAGCTCTTTATGGTGGCCCCAGCTGGAATGCGGGGGCGGCCATTCATGTGATCAGGACTCAGAGAGCCAGTCCTCCGGTGTCAGGATTCTTCGATGTGGAGATCTATGGGAAACAGATTATAGGTAAATTAACCGCTGGGTCTGGATTTCAATCTCTGAACGTAAAAACTACAACTGACCAGCTAGGCCAACTTTGTGCAACACAATACCCTGCAGAACCCAAGACAAACATAAAg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021831 True 2409 mRNA 0.45 19 31093408 31108646

Neighbor

gene id symbol gene type direction distance location
AMCG00021829 NA coding downstream 38 31058059 ~ 31093370 (-)
AMCG00021827 ebag9,LOC107666870,LOC107705161,LOC107600620 coding downstream 42224 31042531 ~ 31051184 (-)
AMCG00021823 gdf6a coding downstream 64961 31000986 ~ 31028447 (-)
AMCG00021819 NA coding downstream 324664 30767734 ~ 30768744 (-)
AMCG00021818 NA coding downstream 351633 30730655 ~ 30741775 (-)
AMCG00021826 NA coding upstream 113337 31221983 ~ 31225381 (-)
AMCG00021828 LOC107600623,LOC107666844,LOC107551188,LOC105905365,LOC107705775 coding upstream 201940 31310586 ~ 31350368 (-)
AMCG00021848 med30,LOC107706236,LOC107754270 coding upstream 902796 32011442 ~ 32018134 (-)
AMCG00021847 NA coding upstream 923042 32031688 ~ 32037579 (-)
AMCG00021846 NA coding upstream 938464 32047110 ~ 32047584 (-)
G88643 NA non-coding downstream 131312 30961703 ~ 30962096 (-)
G88562 NA non-coding downstream 530608 30525746 ~ 30562800 (-)
G88545 NA non-coding downstream 667856 30425304 ~ 30425552 (-)
G88435 NA non-coding downstream 1145868 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 1251869 29838518 ~ 29841539 (-)
G88736 NA non-coding upstream 690106 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 750763 31859409 ~ 31859833 (-)
G88762 NA non-coding upstream 880128 31988774 ~ 31989050 (-)
G88795 NA non-coding upstream 986056 32094702 ~ 32094939 (-)
G88831 NA non-coding upstream 1583625 32692271 ~ 32692496 (-)
AMCG00021820 NA other downstream 204820 30877848 ~ 30888588 (-)
G88527 NA other downstream 668796 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 1350600 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 2021648 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 2310127 28781802 ~ 28783281 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 20937 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 954739 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 3151358 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 3238342 34346988 ~ 34380295 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 3270055 34378701 ~ 34388010 (-)

Expression


Co-expression Network