AMCG00021834


Basic Information

Item Value
gene id AMCG00021834
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31704641 ~ 31711077 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021834
gaaagatTAGCATGCCTTATCAGCCAACCTTGTTTACCATCTGCAATGGTCATCGTCTGTGATGAAACATGATCTGTGAAGATTTTTAAGGTGACGGTGTCAGAGAAAGATGATCAAGTGGCAGAAGTGCTTTGAATATTTTCCATCATCATAAACTGCCCCGCTCTCTGTTTAAAAACTAACACTGAGCCAGACAAGAAGCACTCCGACTCGAGAAAGCTAAGGCATAAACTTCAACAGGAAGAGAAGAGCAAAAATGTCCGAATCAAACACCAAAACTAGTCAAAAGAAGCCGCCcaacaaaaatgtgaagaaGTTGCGAACTATAAGCATGGTGTGTAGCTTGGCGAAAAGCTGGCAGAACTGGGTGGcagagaatgaagaaaagcaaGCCAGTGAGCCATCTGGATGGACCCCTTCTGATGATAAAAATGAGAAATCATCCAAGACGCATCCAAGAGCACAAGACAAACGGGGAACGAGCAAACTCACAGTTGACTCTGAGAAGGAGCTTCTCAACTCTAAAATAAGGAGCAAAAAAGTGGTTAAAACCGTGACCAGTAAAGTACAGGAGAAAGGGGTGGGCATTGGATTTTTGACCAACAGGTACCACAAAGAAGCAGATGAGGTGGATAAAAtactgagagagaaaatgtcTCCGACGAGAAGAAGGAAATGCTCCAACCTGGTGTCGGAGCTCACAAAGGGTTggaaagagatggagaaagagaaaaaggatgTCACAGTGGAACTGGAGGAAAACCGGATCAACAGTATGGACTCGGAGGACAGTGGGTTTTCAGAGGGGAATGACAAAATCCAAGAAAGggcagaaaatacagaaatacaagagGAACTAGTTGAAGTTTCATGTGTGAAGATCAAGCGACCTTCTACTACAGTGATCAATAAAGATGTGGACGAAGTCAAAAAGATTAACATTCTTGCCAAGAAATACAGCCCAGTGGGGAACCTAAAGAGCAAGTGGCACGACTGGGCAGAGGAGCACACTGTGAACCAGAAATTGAACCCTTTCAGTGAAGAGTTTGACTACAACCTTTCCATGTCTACTCGGCTGCATAAAGGCGACGAAGGTTATGGGAGGCCCAAAGAAGGCACCAAAACGGCAGAGAGAGCCAAAAGAGCAGAGCAACATATCCACCGTGAGATTAGTGATATGTGTTACATCATCAGAACCATGGTTGACCCGGGGCCTGATGGCAAGACACGGGTGACATTTGGGGAACTGTTCGACAGATATGTACGCATCTCAGACAAAGTTGTTGGAATTCTGATGAGAGCCAGAAAACACGGAAAAGTACACTTTGAGGGAGAGATGTTGTGGCAGGGACGAGACGACCATGTTGTGATTACTCTTTTAGTGTAGATATTTACTTGGTTAGGAGGCCAAAATCCCCAAAGCAGCCCAAAAGGCCCTTGTTCATTCAAGAAAGGTGATatactctttattttttaattcacactTACAGAGGAGTGTTTCCagataaaatagttttttagcCAGTATATTGGTATGAACTGTAACATTTCAGTGAATTTAATGCTTGCACCTACAAATGATTTCTGCTACTTCACAGGCTTGCGGTGACAAGGCCCCATTGTCCCAAATTACCaaatcttttcttattttaagtcAAGTGCTCTTGCGTATGTCACATAAACTATAAAAGATCATCTGCTCTAATGTTGGGTGTCATGGAAAGTTATGTTATCTGACTCAGAAGTCTTAAATTTGTAACCGAATGTAACATGCtaagtaaaagaaaaacttaaGAAAACAGAAAGCGGAATTTCCCAGCTTTGTGTCTCATAAAACTATTTGTTTCTATAATAGAGTCACGTCAAATCTGATAatggctgttgttttttaatctgcaccagTATGGAGCCTGATTTATTCCAGCAGGGatccacaatacattttaaagtttatattcCAACACTTtgcacagaataaaaacaaaaaaggtagaCGAGTCTGTGGAAGAGATCAATTTTCTGCAATGCAGTGCTCCCACAGCTAAGGCCAATTAAAGTGACAAGTGTTTCAAtcgaaaatgaaataaattaatttgtcatCCACTTGGCAGTCGGTGATAAGTCCAAACTATTacataaaaagtgttttattagcCACATAGACATGTgtagaaagaaaacatataaCAGACTCCAGGTTACTAGCGTCgatcaaaatataattcagaTTAATTCAGTTGCTGTTCTAAAGCAATCTATCAGTACTCATTGTCTTCAAAACctgcaacaataacaatctAACAATCTGTATAGCTTAATTAACAGTAGTTTGCAGTAGTGTTATCATAAcaattttaatatcaatatGCTCTTTATGTAGAGAAGGGCAgggaaattgtatttatctaGTATTCAAAGTAAGGGATTCTTGGGAATAACTCACTGACACGttgtgaatatttaatattctgtttCAATGTAGAAATCATCCAAGACGCATCCAAGAGCAGAAacgtaaaatgtatttataaactaTAATAATTCCTGTGGACtatatttctttttctatttttctattgCAAAATGTAGGCtctgtaaattaaaaagctgAGTGTTTTTCACTTTGTCCCTTTATCCTTTTATCCATTTTCAACACTGAATGTGGTGTATTTCgaatcattttttgtttgcgGTTCATTGATTCTTTTAGCATAACTTCGTTTGCCTTTGCTTTAAAATCTAAAGTAGTGCTCCATGTAACTGTGACATTTTCAGATGATGATTGCTGTAGTATATGTCTGGAAAAGTACATGTAATACTCCAATAATTTACAAAGACATTTactatattcattttcatttattacaaaaagcaAGCCTTTGTAGACTTATCTCAGTGACAGGGGCACATACCTGGAAACAGATGACACATAATGATAAACCAAGTTTTGTATTCAACAGAAATAGAGAATAAATAAGGGAAAATACTGCTATGTTTACAAATAGGAAGGCAATCTTCATGTACTTTCCAAAAGTCTTAGTTTGTGTTTCTATTCCCACCAACTAAAATTGATTAACGGTGGAATTGGCTTCGAATGAGCCTGATTTCACTACACAGAGAGCCAATAGTGCTTACATGTCCATTTCTCTAAAAGGTGAGTGGCTGTGTAGCATCTGTTGGTCATTAGAAAGCATCCTTTTGAACATGTATTCCAGTAATTGTTTGattctttgcatttgttttcctttttactgTATTTGACAAACAGCTGTGCCTCCATATGGaatattgtcattttaacaaattaaccaGTGTGTAGTCACTACAGGGCCCCATGCAGGACAAGAAGAGCAACCAATTTTCTTCAATGAATTCATAGctagaaaaatattaatatgatttatatgAATGAAGCATACCATAGCAGGTAGTGTACACCAGGGACCTGGGccattatacatatacaatacatacacattacaGAATAGTGAaatttgtaattgaaatgtgatatgtaaataataataattattattataattacaattataattataatttaaaacagtggTACAGGATAGTTGTCTGGCACAATGTTGTCATTAGTCTGCCTGGTAATGGGATTTTTTCCACTAAGACTTAAAttaaacagcacagcaaaaAGCAACATAATGACACTTTGCTGGGAAATATGATCTACTCTGAATCTATTTTATGAACAACATATCTGTGGGAGATAGTGTCTGGAAACAAtattaagtttatttaatttataccCAAAGCTCAGCTCATACTGTACTCAACATAACACTTAGTATCCAGTAGCAAGGAGGGAATGTTAGAACTTAGATAGTTACTTTGAAGCCCATTTTCTCAATGATGGCAGCACATTTTCACAGTACATCCGGCATCATTAACAGATATAAATAGGAGCCCTCAAAATGAGTCACACTGTAGCAGAGTATTCACCTTAATGCACCTCTGAGAAAGACCTTTGTTAGTCACTTACTTTTCCAAGTCATTACAGGTATTCATTTGGGTCTgaaaaatctataaaacaaCAAGAAGAGTTTAATCTTTGTGTCATCAGTTCCTGTCCAGAATGAAAAAGTgtcacacaaattaaaagagCTCAACCCGAGCTCTGAATAGAGGCTGTTGCTTCACTCACCTACAGTAGTTTGTATTCagtctatatatttattctctGCAGTCCAACCCAATGGAATGGTACATGTTCAGGTGTCAAATGATCAGGCCTGGTCTAACAAACTGATAACTCCTTAACAGAAGAATGTcttcatgtattgttttttaaagaatgagtatcatacatttccatttctaaaAGAATGTATTTACACTTAGTAAGGCAAGTGATTAATTGCATGTTGCATTTTGATAAATCTAGGAACTCATTCATTATGTTGTGCCTGCtatgaaaaacctgaaaagtggaggaagaggaagaagataaacaaataaatataaaaaaggagaaaatctCTAAGCCAGGTTGGGGTTCTGACTAATTGATTCTCGAGTCTCATTCACTGGTAAATCAACCAATTTAATACATTAGAGATCCTTCCAGCCTTATAATCCATCCAAAGTTCAACTCTTAACTGAATTCAGCTTGTGCATGAGTGTTCTTCAAATTGTTATTACTCCTGGAAGTTTTGTAAGAGAATATAAGGCACGATTTCTCAGTTTCATGGGTGCAAGTTTAAGGTGTAGGTTCTAAAGCTAGAtcaaaaaaatcaaaaagatAATATACTCCAATACAGACAAATTGCATGGTTTAAACACACCATTGTAAGTGTCACAACTGTCTGTGCAAACAGCCATAGACATGGAGGACTCAATTGTGGGATGAAGGTGTGTAGCAGTCCAGGTCAAAGAGCTGGCTAACAAGGCAATAGAGGAAAGGCAAAAGCAGTAGTTGGGGGTCACAGGTGGTAGGTCATTCAATCAGGCATACAAACAGCCAGAGGGCAATCCAGGAGTCAAAACACAGGGTGCAAACAAAGGCCAGAAAACCATGTAATCCAAAAACAGGCAGTATGCTTCAAAATGCATGTAAACTGACAAGACTTAACATTACATGCAACTAACAGGGGGTTGAAatacagagcagagggaagcaggggacagggatgtgtgGTGCTGGTCCAACGAGAGAAGAGGGTTGATGgtgcatgtgcacatggtgctgaggaatgttaattgggtgattgatCATTGTGCTGGGAGTGTGAGAGACGGGGTTAGAATTCAGGTGATGAGGACCTCTGTAGgtgaactggggaagtgtggagagcTGATGTAACAGTAAGCATATCACACTATTTGTATGTGCCACTATCAAGCCATATCACTAGATGGCACTTTTTACAGTAAGAATATGAATGCAGTAAAAGCTAtatcatattgttattttcatttatttgtttgtttgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021834 True 5461 mRNA 0.38 2 31704641 31711077

Neighbor

gene id symbol gene type direction distance location
AMCG00021838 angpt1,LOC106588502 coding upstream 28241 31673034 ~ 31676400 (+)
AMCG00021836 NA coding upstream 51642 31635170 ~ 31652999 (+)
AMCG00021839 NA coding upstream 120384 31583041 ~ 31584257 (+)
AMCG00021835 rspo2,LOC107679648,LOC107600624,LOC107755916,LOC107705839 coding upstream 258986 31419506 ~ 31445655 (+)
AMCG00021833 LOC103365770,LOC100694149,LOC101483159 coding upstream 299839 31370098 ~ 31404802 (+)
AMCG00021837 samd12,LOC107592942 coding downstream 44276 31755353 ~ 31763003 (+)
AMCG00021841 LOC101464589,LOC102196503,LOC102793765,LOC106588504 coding downstream 158995 31870072 ~ 31871025 (+)
AMCG00021840 LOC108430552,LOC106928852,LOC106964918 coding downstream 243510 31954587 ~ 31981028 (+)
AMCG00021842 NA coding downstream 348039 32059116 ~ 32065047 (+)
AMCG00021843 rad21,LOC108243945 coding downstream 371057 32082134 ~ 32092685 (+)
G88677 LOC101154678 non-coding upstream 489972 31214309 ~ 31214669 (+)
G88666 NA non-coding upstream 572406 31130347 ~ 31132235 (+)
G88655 NA non-coding upstream 656112 31047803 ~ 31048529 (+)
G88609 NA non-coding upstream 973773 30727284 ~ 30730868 (+)
G88485 NA non-coding upstream 1446444 30256024 ~ 30258197 (+)
G88741 NA non-coding downstream 147758 31858835 ~ 31859037 (+)
G88743 NA non-coding downstream 148844 31859921 ~ 31860135 (+)
G88746 NA non-coding downstream 183390 31894467 ~ 31986530 (+)
G88761 NA non-coding downstream 277707 31988784 ~ 31989051 (+)
G88771 NA non-coding downstream 317881 32028958 ~ 32029166 (+)
AMCG00021802 kdm1b other upstream 1235721 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 1296869 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 2319316 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 2429294 29264827 ~ 29275347 (+)
G88276 NA other upstream 2639302 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 3215476 34926553 ~ 35077090 (+)
G89142 NA other downstream 3500056 35211133 ~ 35263537 (+)
G89299 NA other downstream 4253494 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 4939155 36650232 ~ 36659244 (+)
G89578 NA other downstream 6410180 38121257 ~ 38151049 (+)

Expression


Co-expression Network