AMCG00021840 (LOC108430552,LOC106928852,LOC106964918)


Basic Information

Item Value
gene id AMCG00021840
gene name LOC108430552,LOC106928852,LOC106964918
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31954587 ~ 31981028 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021840
ATGGGTTTCAGGGTCATCGATATCAGCTGTCTGAGGCTGGGATATGACTACAGAGAAATGCTGCACAACGCCACCTTCTGTCTGGTTCCTAGGGGACGGCGGTTGGGGTCCTTTCGGTTCTTGGAAGCCCTGCAGGCTGCCTGTGTCCCAGTGATGCTCAGTAACGGATGGGAGCTGCCTTTTTCAGAAGTAATCGATTGGAACACAGCTGCTGTCATTGGAGATGAGAGATTGCTGCTGCAGATCATCCAGGATAGAATTTTCCAGCACATATCACGAAACAGCTTAATGTGGAACAGTCATCCAGGAGGCCTCTTCGTCCTGCCCCAGTATTCGTCATATCTAGGAGACTTCCCCTTTTACTATGCTGGCCTTGgcaTCAAACCATACACAAAGTTTACAGCTGTCATACACGCAGTAACTCCGCTGGTCTCCCAGTCTCAGCCAATTTTAAAGCTCTTGGTAGCTGTAGCCAAATCTCAGTACTGTGCCCAGATAATTGTTTTGTGGAACTGTGACAAGCCGTTACCAGCCAAACACCGATGGCCAGCTACGTCAGTGCCTGTCATAGTGATTGAAGGAGAGAGCAAGGTAATGAGTAGTCGATTTCAGCCCTATGACACAGTAATCACTGATGCTGTCTTGAGCCTTGATGAGGACACAGTGCTCTCAACTACAGAGGTGGATTTTGCCTTCACTGTCTGGCAGAGCTTCCCAGAGAGGATTGTGGGATACCCTGCCCGCAGTCACTTTTGGGACAGCAACAAGGAGAGGTGGGGCTACACCTCCAAGTGGACAAATGACTATTCCATGGTGTTGACAGGAGCTGCTATATACCACAGaTACTACCACTACTTGTACACCAATTACCTACCTGCTAGTCTGAAGAATATGGTGGACCAACTGGCCAACTGTGAGGACATCTTAATGAATTTCCTTGTGTCTGCTGTCACCAAACTGCCACCCATTAAAGTCACACAGAAGAAGCAGTATAAGGAAACAATGATGGGACAGtcctCCCGTGCCTCCCGCTGGGCCGACCCGGATCACTTTGCTCAGCGACAAACCTGCATGAACAAATTTGCCAACTGGTTTGGCACCATGCCCCTCATTCACTCTCAGATGAGACTGGACCCAGTCCTTTTCAAAGACCAGGTATCCATACTGCGCAAGAAGTACAGGGACATCGAGAGGCTCTAA

Function

NR:

description
PREDICTED: exostosin-1b

GO: NA

KEGG:

id description
K02366 EXT1; glucuronyl/N-acetylglucosaminyl transferase EXT1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021840 True 1200 mRNA 0.49 10 31954587 31981028

Neighbor

gene id symbol gene type direction distance location
AMCG00021841 LOC101464589,LOC102196503,LOC102793765,LOC106588504 coding upstream 83562 31870072 ~ 31871025 (+)
AMCG00021837 samd12,LOC107592942 coding upstream 191584 31755353 ~ 31763003 (+)
AMCG00021834 NA coding upstream 243510 31704641 ~ 31711077 (+)
AMCG00021838 angpt1,LOC106588502 coding upstream 278187 31673034 ~ 31676400 (+)
AMCG00021836 NA coding upstream 301588 31635170 ~ 31652999 (+)
AMCG00021842 NA coding downstream 78088 32059116 ~ 32065047 (+)
AMCG00021843 rad21,LOC108243945 coding downstream 101106 32082134 ~ 32092685 (+)
AMCG00021850 NA coding downstream 157544 32138572 ~ 32146026 (+)
AMCG00021844 eif3h coding downstream 212249 32193277 ~ 32219473 (+)
AMCG00021851 NA coding downstream 437273 32418301 ~ 32433938 (+)
G88743 NA non-coding upstream 94452 31859921 ~ 31860135 (+)
G88741 NA non-coding upstream 95550 31858835 ~ 31859037 (+)
G88677 LOC101154678 non-coding upstream 739918 31214309 ~ 31214669 (+)
G88666 NA non-coding upstream 822352 31130347 ~ 31132235 (+)
G88655 NA non-coding upstream 906058 31047803 ~ 31048529 (+)
G88761 NA non-coding downstream 7756 31988784 ~ 31989051 (+)
G88771 NA non-coding downstream 47930 32028958 ~ 32029166 (+)
G88776 NA non-coding downstream 84255 32065283 ~ 32067407 (+)
G88833 NA non-coding downstream 824290 32805318 ~ 32805877 (+)
G88838 NA non-coding downstream 896371 32877399 ~ 32877672 (+)
AMCG00021802 kdm1b other upstream 1485667 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 1546815 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 2569262 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 2679240 29264827 ~ 29275347 (+)
G88276 NA other upstream 2889248 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 2945525 34926553 ~ 35077090 (+)
G89142 NA other downstream 3230105 35211133 ~ 35263537 (+)
G89299 NA other downstream 3983543 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 4669204 36650232 ~ 36659244 (+)
G89578 NA other downstream 6140229 38121257 ~ 38151049 (+)

Expression


Co-expression Network