AMCG00021841 (LOC101464589,LOC102196503,LOC102793765,LOC106588504)


Basic Information

Item Value
gene id AMCG00021841
gene name LOC101464589,LOC102196503,LOC102793765,LOC106588504
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31870072 ~ 31871025 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021841
ATGCAGGCCAAAAAACGCTATTTAATCCTGCTCTCCGCCGGCGCCTGTCTTGTGCTACTGTTCTACTTTGGAGGCGTACAAGTTGCAGCTCCGAGAAACCCGAACCGGCGTGAAGATCACAGCCGACATGGCTCTCACCCGGATCAGCCCTGGCCCCACTTCTCCGACCATTTACAACCCTTTCTTCCCTGGGATCAGTTGGACAACGAGGATTACAATATGCACATCTCGCCCAGACAGAAGAGGGACGCCAACTCCAGCGTCTACAAAGGCAAACGGTGTCGCATGGAGTCTTGCTTTGATTTCTCCCTGTGCCAGAGAAACGGCTTTAAAGTTTATGTCTACCCCCAGCAGAAAGGGGAGAAGATCTCGGAAAGTTATCAGAACATTTTATCGGCCATCGAGGCATCTCGCTTTTACACCTCTGATCCCGGCCAAGCCTGCTTGTTCGTCCTCAGTTTGGATACTTTGGACAGAGACCAGCTCTCCCCCCAGTACGTAcataatctgaaaacaaaagtcCAAAACTTGCATCTCTGGAACAATGGTAGgaatcatttaattttcaatttgtattcgGGAACCTGGCCAGATTACACGGAAGACTTGGGCTTCGATATTGGGCAAGCTATGTTAGCGAAGGCCAGCATCGGTACTGAAAACTTCAGACCCAATTTCGATGTGTCCATCCCGTTGTTTTCGAAAGATCACCCCAGGACAGGAGGGGAACGGGGTTTTCTGAAGTACAATTCGATCCCCCCCTTTAGGAAATATATGCTCGTGTTTAAGGGGAAGAGGTACTTGACTGGAATCGGGTCCGACACAAGGAATGCCTTATACCACGTCCACAACGCCGAGGACGTGGTCCTTTTGACAACCTGCAAACACGGGAAAGACTGGCAAAAGCACAAGGATGCGCGGTGTGATAAGGACAACGCGGAGTATGACAAGTAA

Function

NR:

description
exostosin-1b

GO: NA

KEGG:

id description
K02366 EXT1; glucuronyl/N-acetylglucosaminyl transferase EXT1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021841 True 954 mRNA 0.50 1 31870072 31871025

Neighbor

gene id symbol gene type direction distance location
AMCG00021837 samd12,LOC107592942 coding upstream 107069 31755353 ~ 31763003 (+)
AMCG00021834 NA coding upstream 158995 31704641 ~ 31711077 (+)
AMCG00021838 angpt1,LOC106588502 coding upstream 193672 31673034 ~ 31676400 (+)
AMCG00021836 NA coding upstream 217073 31635170 ~ 31652999 (+)
AMCG00021839 NA coding upstream 285815 31583041 ~ 31584257 (+)
AMCG00021840 LOC108430552,LOC106928852,LOC106964918 coding downstream 83562 31954587 ~ 31981028 (+)
AMCG00021842 NA coding downstream 188091 32059116 ~ 32065047 (+)
AMCG00021843 rad21,LOC108243945 coding downstream 211109 32082134 ~ 32092685 (+)
AMCG00021850 NA coding downstream 267547 32138572 ~ 32146026 (+)
AMCG00021844 eif3h coding downstream 322252 32193277 ~ 32219473 (+)
G88743 NA non-coding upstream 9937 31859921 ~ 31860135 (+)
G88741 NA non-coding upstream 11035 31858835 ~ 31859037 (+)
G88677 LOC101154678 non-coding upstream 655403 31214309 ~ 31214669 (+)
G88666 NA non-coding upstream 737837 31130347 ~ 31132235 (+)
G88655 NA non-coding upstream 821543 31047803 ~ 31048529 (+)
G88746 NA non-coding downstream 23442 31894467 ~ 31986530 (+)
G88761 NA non-coding downstream 117759 31988784 ~ 31989051 (+)
G88771 NA non-coding downstream 157933 32028958 ~ 32029166 (+)
G88776 NA non-coding downstream 194258 32065283 ~ 32067407 (+)
G88833 NA non-coding downstream 934293 32805318 ~ 32805877 (+)
AMCG00021802 kdm1b other upstream 1401152 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 1462300 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 2484747 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 2594725 29264827 ~ 29275347 (+)
G88276 NA other upstream 2804733 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 3055528 34926553 ~ 35077090 (+)
G89142 NA other downstream 3340108 35211133 ~ 35263537 (+)
G89299 NA other downstream 4093546 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 4779207 36650232 ~ 36659244 (+)
G89578 NA other downstream 6250232 38121257 ~ 38151049 (+)

Expression


Co-expression Network