AMCG00021845


Basic Information

Item Value
gene id AMCG00021845
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 32095525 ~ 32097519 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021845
TTATATCTCAGATtatgaaagtaaaaaaagtttggcttgcttgttttaaataattgttacaatacCCATGTAGACTCTGTTATGTTTCCGTGGGGAAGAAATTCATAGTAAGAACCGGAAGCACGTTTCTGACGAGGCCATGCTTACATGTTTGAGTTCAGCAGCCCTGGGTTGTCTGGCGTTTATGATTTTAATTCACaatattttaacttaaaataataaataaatacatggtcTTGGTTTATACAGATTCGTAACTTTCGATTTGTCTATAAGTTAAAATGAAGGTCAAACGCCAGAAACAAGCCAAGAAAACCATcagtttttataaatacaacttCAGTTTCCGGGAACCTTTTCAAATCTTGCTCGATGGCACTTTTTGTCAAGCCgcccttaaaaataaaattcaaattaaagagCAGATGCCAAAGTATCTGATGGGAGAGGTACAACTGTGCACAACGAATTGTGTTTTAAAGGAACTCGAGTCCCTTGGGAAGGAGCTTTATGGGGCAAAAATTATCTTGCAAAGGTTTCAGATTCGTAACTGCCAGCATTTCAAGGATCCAATTCCTGCATCGCAGTGTCTCAAGTCCATGCTGGGAGAAAACAACCCTCACCACTACTTCATTGCTACACAGGACCAGGCGCTGACTGCAGCAGTGAAGAAGATTAATGGGGTTCCCCTGCTATTCATCATTCAGAACACCATAGTACTGGATAAGCCCTCTCTCCAGTCAGTGGCTTATGTCCAGGCAATTCAAGCAGGTCAGGTAGTGACAACGCAGGAGCAGAAGAGCATCCAGACCCTGAAAGAGGAGCAAGGCCTGGTGAAAAACATGGAGCGCAAGGGCAAGAAGCGTAAGAGGAAAGGGCCTAACCCCTTGAGCTGTCTGAAGAAAAAGAAGTTGCAGTCACCTTCGGAAAAAACAGCTGATgtcaagaaaaggaaaaggagtcGTCACAGAAAGCACAACGCGACAGGGCTTTTGACTTTGCAAACGGCAGCTCCGTCTGGCACGGATTAACACTGTCTAGTCCGGCAGACGGAGTGTGTCACTCACTTTGTTCTATGTTTCTTACTCTCCACATCCATAAACTCTTAGTTTTCTTATTTCAGAGATTGTAAAGAAActattttttctgtatatatgtcTGTACACATTCATAATCTATGATACATGAAAGGGTTTGTATTGGCTGGATGAGTGAGAACAATTGTTAATTCAGGGTGTTCttcagaaaactaaaatatgtaaatcaacTGAATACTGCAATAAACGTCATTACCATCATGAATACATGTTGATGTTAGCAATTTTTATCATGATGTTGTTTCCCGTAATATTATAAAATTGCGTGAGTTTGTTAAACCATGCTCACATtggataaataataatgaaataaccATAAACCGAAAATTAAACCCATGTGCAACA

Function

GO:

id name namespace
GO:0032040 small-subunit processome cellular_component

KEGG:

id description
K14773 UTP23; U3 small nucleolar RNA-associated protein 23

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021845 True 1442 mRNA 0.40 3 32095525 32097519

Neighbor

gene id symbol gene type direction distance location
AMCG00021846 NA coding downstream 47941 32047110 ~ 32047584 (-)
AMCG00021847 NA coding downstream 57946 32031688 ~ 32037579 (-)
AMCG00021848 med30,LOC107706236,LOC107754270 coding downstream 77391 32011442 ~ 32018134 (-)
AMCG00021828 LOC107600623,LOC107666844,LOC107551188,LOC105905365,LOC107705775 coding downstream 745157 31310586 ~ 31350368 (-)
AMCG00021826 NA coding downstream 870144 31221983 ~ 31225381 (-)
AMCG00021861 NA coding upstream 1909140 34006659 ~ 34014890 (-)
AMCG00021860 LOC107748562 coding upstream 2082073 34179592 ~ 34189526 (-)
AMCG00021864 NA coding upstream 2145346 34242865 ~ 34249647 (-)
AMCG00021865 NA coding upstream 2154155 34251674 ~ 34260396 (-)
AMCG00021863 LOC107751906 coding upstream 2166296 34263815 ~ 34274711 (-)
G88795 NA non-coding downstream 586 32094702 ~ 32094939 (-)
G88762 NA non-coding downstream 106475 31988774 ~ 31989050 (-)
G88742 NA non-coding downstream 235692 31859409 ~ 31859833 (-)
G88736 NA non-coding downstream 259286 31798752 ~ 31836239 (-)
G88643 NA non-coding downstream 1133429 30961703 ~ 30962096 (-)
G88831 NA non-coding upstream 594752 32692271 ~ 32692496 (-)
G88866 NA non-coding upstream 1572948 33670467 ~ 33670919 (-)
G88871 NA non-coding upstream 1662753 33760272 ~ 33760620 (-)
G88873 NA non-coding upstream 1663723 33761242 ~ 33761474 (-)
G88883 NA non-coding upstream 1747595 33845114 ~ 33845452 (-)
AMCG00021849 NA other downstream 26061 32063385 ~ 32069464 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other downstream 963340 31129583 ~ 31132185 (-)
AMCG00021820 NA other downstream 1206937 30877848 ~ 30888588 (-)
G88527 NA other downstream 1670913 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 2352717 29730077 ~ 29742808 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 2162485 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 2249469 34346988 ~ 34380295 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 2281182 34378701 ~ 34388010 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other upstream 3277497 35375016 ~ 35395771 (-)
G89368 NA other upstream 3846233 35943752 ~ 35946984 (-)

Expression


Co-expression Network