AMCG00021848 (med30,LOC107706236,LOC107754270)


Basic Information

Item Value
gene id AMCG00021848
gene name med30,LOC107706236,LOC107754270
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 32011442 ~ 32018134 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021848
ATGGCCACTCCTCCAGTAGCGGGAGCAGGAATGCCTTCTGGAGCATTCCCAGGGCAACAGGCCCAGGCGGCACGTGAAGTAAACACGGCCTCTCTTTGTCGCATTGGACAAGAAACTGTGCAAGATATTGTCTTCAGGACCATGGAGATCTTCCAGCTGCTGAGAAACATGCAGCTGCCCAATGGCGTGACCTATCACACCAGCACACACCAGGACCGGCTGGGCAAACTACAGGAGCACCTGCGGCAGCTTTCTGTGCTCTTCAGAAAGCTCCGGCTGGTCTACGACAAATGCAACGAGAACTGTGCTGGGCTGGACCCTGTCCCTACCGAGCAACTGATACCGTATATAGAGGAGGATGGGTCAAAGCACGATGACCGCTCAGCAAACCAGATTCGATATGCCACCGAAGAGAGGAGGGAAGTGCTGGAGGTGAAcaag

Function

symbol description
med30 Predicted to enable transcription coregulator activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED30 (mediator complex subunit 30).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 30

GO: NA

KEGG:

id description
K15143 MED30; mediator of RNA polymerase II transcription subunit 30

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021848 True 441 mRNA 0.55 3 32011442 32018134

Neighbor

gene id symbol gene type direction distance location
AMCG00021828 LOC107600623,LOC107666844,LOC107551188,LOC105905365,LOC107705775 coding downstream 661074 31310586 ~ 31350368 (-)
AMCG00021826 NA coding downstream 786061 31221983 ~ 31225381 (-)
AMCG00021831 NA coding downstream 902796 31093408 ~ 31108646 (-)
AMCG00021829 NA coding downstream 918072 31058059 ~ 31093370 (-)
AMCG00021827 ebag9,LOC107666870,LOC107705161,LOC107600620 coding downstream 960258 31042531 ~ 31051184 (-)
AMCG00021847 NA coding upstream 13554 32031688 ~ 32037579 (-)
AMCG00021846 NA coding upstream 28976 32047110 ~ 32047584 (-)
AMCG00021845 NA coding upstream 77391 32095525 ~ 32097519 (-)
AMCG00021861 NA coding upstream 1988525 34006659 ~ 34014890 (-)
AMCG00021860 LOC107748562 coding upstream 2161458 34179592 ~ 34189526 (-)
G88762 NA non-coding downstream 22392 31988774 ~ 31989050 (-)
G88742 NA non-coding downstream 151609 31859409 ~ 31859833 (-)
G88736 NA non-coding downstream 175203 31798752 ~ 31836239 (-)
G88643 NA non-coding downstream 1049346 30961703 ~ 30962096 (-)
G88562 NA non-coding downstream 1448642 30525746 ~ 30562800 (-)
G88795 NA non-coding upstream 76568 32094702 ~ 32094939 (-)
G88831 NA non-coding upstream 674137 32692271 ~ 32692496 (-)
G88866 NA non-coding upstream 1652333 33670467 ~ 33670919 (-)
G88871 NA non-coding upstream 1742138 33760272 ~ 33760620 (-)
G88873 NA non-coding upstream 1743108 33761242 ~ 33761474 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other downstream 879257 31129583 ~ 31132185 (-)
AMCG00021820 NA other downstream 1122854 30877848 ~ 30888588 (-)
G88527 NA other downstream 1586830 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 2268634 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 2939682 29069201 ~ 29071760 (-)
AMCG00021849 NA other upstream 45251 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 2241870 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 2328854 34346988 ~ 34380295 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 2360567 34378701 ~ 34388010 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other upstream 3356882 35375016 ~ 35395771 (-)

Expression


Co-expression Network