AMCG00021849


Basic Information

Item Value
gene id AMCG00021849
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 32063385 ~ 32069464 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021849
ATGAATGCTGAGACTCAGTATGAAGATACTGTCTCAACAATGGtgttggaaaacattaagaatAAACTGATCAATGCCTTCAGGGGAACCGGAGAGCAGGTTGCAGCCTCCTGTGCTGAGAATGATACTGAGAGATGCATCAGAAAAGACTTCCATGCTAACGAAGAACTCCGCAGAGCTAAAATAGATGGAGCAATAACCTGGTTAAGGTCTGAATTGCTGGAGATGCGCTCTCAAGACAGGCAGCTTGCCAAAACACTACTGGACATAAACAGTGAAATCCAGAGACTACGGAGAGAAAACGAAGCGTCGAGTctggagaagaaagaaaacgtCACAGCTAATCACAGTGGTCTTCAATCATCCTTTCCCTTTTAA
>TU110795
AGTTACAAAACAAGCCAGTAACACAGCACGAAGAGAAGAGCAAAgctgtaaaaatgaaaataaaaaaaataggagCAGATCACTTGTATGGTAGATTCTTTTTAGTAAGACCACATGCGGGCAATGTCTGACAGAAATGAAAAGGCGTGAAAAACAAGCTACACTTTCAATAGAGAGTCAGCGATTTTGGTGGAAGGAAGAGCAGTGGCAGTACTTGGATGGCTGCACCTAACCCAAGGGCTGAGGAAAATCACACAGGGCTTGTTGTATTGTACAACAGAGACCAACTTCTTCCAGTCCCTTGCTCAACTTTTTGACTCCTGTTGCGGGTGGCTTTTGCAGTGTCAAAATGAATGCTGAGACTCAGTATGAAGATACTGTCTCAACAATGGtgttggaaaacattaagaatAAACTGATCAATGCCTTCAGGGGAACCGGAGAGCAGGTTGCAGCCTCCTGTGCTGAGAATGATACTGAGAGATGCATCAGAAAAGACTTCCATGCTAACGAAGAACTCCGCAGAGCTAAAATAGATGGAGCAATAACCTGGTTAAGGTCTGAATTGCTGGAGATGCGCTCTCAAGACAGGCAGCTTGCCAAAACACTACTGGACATAAACAGTGAAATCCAGAGACTACGGAGAGAAAACGAAGCGTCGAGTctggagaagaaagaaaacgtCACAGCTAATCACAGTGGTCTTCAATCATCCTTTCCCTTTTAATCAAGCAAAGGAGAGGCAGTCTCTTGTACAGATTCACGAAGAAGCCAGTTGTTCAGTTGCTGCAGTTAGGTGATCTTTAACTGAATAATGATGAAAAGACTAGTATAATTTACTGCAATGCACCTCAGGAGATCCTCAAACATTTAACGGATGTTCTGctttttgggaaaaaaatgtactgcTGTGTATTTTCTAACTCCAGAAAATAGACTAAAGTTCACTGCCGGGTATGAATGTTTAACATTATCTGTAAGCACTGACTTATCCTAGAAACTCCAACTGAACAATGCATAAAAATGTTGTTAGGGACATAGTGGTTAAtgtactttgaaaatgtaacacatGGAATATATAGCATAGGCTGTCATTCAGTCATTTGGGGAATGTGGGATAACCACATACTGTATATGGTGGGGAATGTaatcagttggattcaggtttTCAGAAACAAAGTCCAAAATTGAGACAAATgtcaaaaaaaacaatttacttGAGCTCACATTTTACACACTGTGAATATATTAATAGAAAACCTGTATTAATAGCATATTGCTTGCTGTGCATTACTTTTGATAAAAAATCCTGCCAACTTTGAAAGTTGGCATTGTATCTGCTTCAAACATTTGCCCTGCCCACTCTGTGTCAATGATACTGAATGTGTAGATTTCTGAGAGTCTTCCAAAGCACATTTCCAAACCTCATGTGATAtttcaggcaaaaaaaaaaaggtattcaAAGGATCCTCAAGCTATACAATCTTTCTTTGGTAAGAAGCTACTTGGAGTTCTACATTTCCTTGAGTTTTACTAGGGGGGGATTAAGATGGAAAGGGGGGGTTGGCTTGCTTCATTACTTTGGTACGATTCCCACTGAAGCCCTGAGGCTAGTATCTAATCTATTGTGCATAAATCCACAGTAACTTTGTTACAGATTTTTTGTGGTGAAAAGAAACTGGTGGGGTTGCCTGTTTGCTCTGAGTGTATGCTATAGGTTGGATGAGCTGGTCTTGAATGCAGCCTATGTCATTGCTAGCCTTGGAAAGGAATTCCCAGATGACACTGCACAATGACTGCTTTGGGGGGGTGTTATTCAGGGgacaatttgtttttggtttgctgAACATGAGAAACCCCGGTGGCTGATCTGGTGCCTGTTTAATTCAGTGTATTATCTGTTCCATTTGCATCAAATCCTTTGAATGGTGTGATAAATGGTACACAttctgtatacatatacatactcTGGGcatgcagtgtgaaaaatagTGGATAACTTTGTGACATTGTGACAATTGGAGGATGCATGCTTTGTCAGATTGCTTTTGAAGCAGTACCAAAGTCACAGCAGTGATGAGCCCAGTCCTATTGTTTGCAATTCCAAGTTGGGgtgaaaaaatggaaaaaaggaatTGGCAATTcaaattttataattataattaagtgATAATGAATGCTACTCACCAATCTTCCATCTACTCTACCAAATGTTAACTGGCATATCATTTGAAATTCCAAATTAATGAGAAACAGTtacaaatgataattaaaactaaattaaaatgtggctTCTGCTGAACCAAACCATCCAATTTGTTAACTTTTCAGGTTGCCTTAAGCATGTATATTGCACAACATTAGGATGCTAGTAGAATCAAGAATCCACTAACATTTTCTCACAGTGCTTTTCCTCTTGGTTCTCAGTattgtgttcaaatgtattttcatatggaaaacaaaatccaaatgcTTGTAAGTGATGcataatggcaaaataaataataaaaccaccTTATCATGCCTCAGGGTCTTAAAAACACATACCATTTCAACATccctttatatatttaagacaTTTGGATTATACATTTAGACCATTCTATTCTTCTCTTACGCCtacattttattcactgtaatgtgtTAcccttgtaatattgtgtaaagGTAGAACATAGTATATTAGTGATTGTTAAACCACGTAAGGCTCTTTGCAttgcaagaagaagaagaagaagaaatgtaCTCAGTTGTTCTTAAGGCAAGACCAGGATATCCTGGATTGTTCTGATACAATGAGAGAACAAAATTTGGATTTGTTGAATGAACACTACATACTTGGACACACATATCTCACTTAACTCTCCTGAATGAATGGTAAGCTTGGTGAGAGACTGTGAGGAAAATAGCTTTTTTAATAATCtaccaaaatataaatatacactctTTCACAACTGACTTTGCACAACTCTTTTCCCCCAAAAGTTGTTCTTTggaatgtaatgttttcacatttccaTATACTGTTAGTAAAGAATATATAcactcaaaattattttaacaattaatGTTTGAgcaataaccccccccccaaaaaaaaacaacaacaacatactaGCTAATACTAATCAGAAGTagcaaataataaacaattgaagTACACTCACATTTACTCAAAGAAAAGTAAGTGTTTAATAGACTTTATTATTTGGTATACTCAAGTACTGCAGTGATGCAGAGAGTAGCTGTTAAAAATCAGTTAGGAATGGCAGAGAACATGTCCACCTGTCAGTTGTCGtggtgttatttttgttaaaaaaaaactcttttaTCCCATTCAAGCAAACGCTTTGCTTATAAATGCTGTCACTTCAgagaaatcatttttttccttttaacatttataaatccaagtctaagaaacaaacaaataagacgTACAAAAAAAGTTACAGTATTGACAATTCTTCTacttcattatttatacattttatttaagaaagagCGGCAGAGGCATTCTGATTTGTCGAGAGATTTACTTTGTGTTGCTCCTTTCATCAAACATACGGCTAAACCTAATTTCAGAGCATGCAGTATTTTAGTTTACAAAAAGGTGGAACACAGGTCAGCATTGACAATTATATCACGCACCTCTTCCATATTtactacagaaaataaaacagaaacataagTCCCCCGTGAGATTTGTTCCATGGAAAGTTGTTAACATTGTTCCGGTTGCTTTAAATAGttgaaaaacacttaaataaatcgtaagaaaaagtatttaatcataaattagacaaaaataaaaagcaaaatatactCTTACAAGTAAGGTACGTTACttgttttcttatatttcttatatttatattaactttACACATGAAACTATGGTAACTGAAAGAATGATATTCACATGGATATTATGTGTTCATGTTTAGGTTTCTAATGAGCAATCTAAGCCACACCTGACTGCAGTATGGACACACTGTACTGACACGCCTGCATTCATGTGTaaccactgtatatatgtatgttcagTATTTCATCTTACCATGTTAAGCAACATGGCGACTTGGAATTGCATACAAAATGGAAGCAGCACATTTGAAAGTTACATACAGCTCTGAACTGCTCTTCTCTTACAGAGCCTTGTCATATTTAAGCAAACAgcctttgaattaaaaacataaatccaaGCACGATATGGTGCCCAAACAAACATGGCGGCATCTTGTAACTTGCCCTTGTACAGAGGCTGATGTGTTGGGGAAAAACAACATTCTGAAGGATGCTGATTGTAATATGACAAGGCTGTGCAATAAAGCTGTTGTTCTTCATCTGAGAGCTGCTAAGGCATAGAACTTCTCCTGCTGGAGGTGCGTCTAGGCGAGTGAAGTGCGGTGCCCACAAAGgctagactggagcacacttcCCCTGAACTGGAGTAGAGGCTGCTGCCCTCTGTGTCGCTCTCAGAGTCCAGCTCAGTGATGTCTGTGCACTCCAGTTTCAGCTCCTGGATTCCAGTGTGAAGATCCATCAACTGCTTAATCAGAAGCTGGTCCTGAGAACGCA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021849 False 378 mRNA 0.44 2 32067265 32069115
TU110795 True 4584 TUCP 0.37 3 32063385 32069464

Neighbor

gene id symbol gene type direction distance location
AMCG00021846 NA coding downstream 15801 32047110 ~ 32047584 (-)
AMCG00021847 NA coding downstream 25806 32031688 ~ 32037579 (-)
AMCG00021848 med30,LOC107706236,LOC107754270 coding downstream 45251 32011442 ~ 32018134 (-)
AMCG00021828 LOC107600623,LOC107666844,LOC107551188,LOC105905365,LOC107705775 coding downstream 713017 31310586 ~ 31350368 (-)
AMCG00021826 NA coding downstream 838004 31221983 ~ 31225381 (-)
AMCG00021845 NA coding upstream 26061 32095525 ~ 32097519 (-)
AMCG00021861 NA coding upstream 1937195 34006659 ~ 34014890 (-)
AMCG00021860 LOC107748562 coding upstream 2110128 34179592 ~ 34189526 (-)
AMCG00021864 NA coding upstream 2173401 34242865 ~ 34249647 (-)
AMCG00021865 NA coding upstream 2182210 34251674 ~ 34260396 (-)
G88762 NA non-coding downstream 74335 31988774 ~ 31989050 (-)
G88742 NA non-coding downstream 203552 31859409 ~ 31859833 (-)
G88736 NA non-coding downstream 227146 31798752 ~ 31836239 (-)
G88643 NA non-coding downstream 1101289 30961703 ~ 30962096 (-)
G88562 NA non-coding downstream 1500585 30525746 ~ 30562800 (-)
G88795 NA non-coding upstream 25238 32094702 ~ 32094939 (-)
G88831 NA non-coding upstream 622807 32692271 ~ 32692496 (-)
G88866 NA non-coding upstream 1601003 33670467 ~ 33670919 (-)
G88871 NA non-coding upstream 1690808 33760272 ~ 33760620 (-)
G88873 NA non-coding upstream 1691778 33761242 ~ 33761474 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other downstream 931200 31129583 ~ 31132185 (-)
AMCG00021820 NA other downstream 1174797 30877848 ~ 30888588 (-)
G88527 NA other downstream 1638773 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 2320577 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 2991625 29069201 ~ 29071760 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 2190540 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 2277524 34346988 ~ 34380295 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 2309237 34378701 ~ 34388010 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other upstream 3305552 35375016 ~ 35395771 (-)
G89368 NA other upstream 3874288 35943752 ~ 35946984 (-)

Expression


Co-expression Network