Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00021852 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030130.1 |
| NCBI id | CM030130.1 |
| chromosome length | 39556810 |
| location | 32500223 ~ 32508325 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K09184 | GATAF; GATA-binding protein, other eukaryote |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00021852 | True | 1185 | mRNA | 0.50 | 2 | 32500223 | 32508325 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00021851 | NA | coding | upstream | 66285 | 32418301 ~ 32433938 (+) |
| AMCG00021844 | eif3h | coding | upstream | 280750 | 32193277 ~ 32219473 (+) |
| AMCG00021850 | NA | coding | upstream | 354197 | 32138572 ~ 32146026 (+) |
| AMCG00021843 | rad21,LOC108243945 | coding | upstream | 407538 | 32082134 ~ 32092685 (+) |
| AMCG00021842 | NA | coding | upstream | 435176 | 32059116 ~ 32065047 (+) |
| AMCG00021853 | NA | coding | downstream | 486899 | 32995224 ~ 33300230 (+) |
| AMCG00021857 | csmd3 | coding | downstream | 874094 | 33382419 ~ 33395225 (+) |
| AMCG00021854 | csmd3 | coding | downstream | 926991 | 33435316 ~ 33453653 (+) |
| AMCG00021856 | csmd3 | coding | downstream | 966843 | 33475168 ~ 33537910 (+) |
| AMCG00021855 | csmd3,LOC106570400 | coding | downstream | 1040271 | 33548596 ~ 33586500 (+) |
| G88776 | NA | non-coding | upstream | 432816 | 32065283 ~ 32067407 (+) |
| G88771 | NA | non-coding | upstream | 471057 | 32028958 ~ 32029166 (+) |
| G88761 | NA | non-coding | upstream | 511172 | 31988784 ~ 31989051 (+) |
| G88746 | NA | non-coding | upstream | 513693 | 31894467 ~ 31986530 (+) |
| G88743 | NA | non-coding | upstream | 640088 | 31859921 ~ 31860135 (+) |
| G88833 | NA | non-coding | downstream | 296993 | 32805318 ~ 32805877 (+) |
| G88838 | NA | non-coding | downstream | 369074 | 32877399 ~ 32877672 (+) |
| G88867 | NA | non-coding | downstream | 1202449 | 33710774 ~ 33711053 (+) |
| G88872 | NA | non-coding | downstream | 1252918 | 33761243 ~ 33761474 (+) |
| G88882 | NA | non-coding | downstream | 1336771 | 33845096 ~ 33845340 (+) |
| AMCG00021802 | kdm1b | other | upstream | 2031303 | 30449957 ~ 30468920 (+) |
| AMCG00021803 | clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 | other | upstream | 2092451 | 30267402 ~ 30407772 (+) |
| AMCG00021779 | LOC108438266,LOC105891906 | other | upstream | 3114898 | 29378575 ~ 29385325 (+) |
| AMCG00021772 | NA | other | upstream | 3224876 | 29264827 ~ 29275347 (+) |
| G88276 | NA | other | upstream | 3434884 | 29060887 ~ 29065339 (+) |
| AMCG00021881 | LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 | other | downstream | 2418228 | 34926553 ~ 35077090 (+) |
| G89142 | NA | other | downstream | 2702808 | 35211133 ~ 35263537 (+) |
| G89299 | NA | other | downstream | 3456246 | 35964571 ~ 35967384 (+) |
| AMCG00021900 | NA | other | downstream | 4141907 | 36650232 ~ 36659244 (+) |
| G89578 | NA | other | downstream | 5612932 | 38121257 ~ 38151049 (+) |
