AMCG00021854 (csmd3)


Basic Information

Item Value
gene id AMCG00021854
gene name csmd3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33435316 ~ 33453653 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021854
GAGTGTGGATCAACTGTTATCAACAATGAAGGCATTCTTCTGTCACCAAACTACCCTTTGAACTATGAAAACAATCATGAATGCATCTACAGCATCCAAGTGCAAGCAGGCAAAGGAATCAACATTTCAGCTAGAACCTTCCATTTAGCACAAGGCGATATTCTGAAGATCTATGATGGGAAAGACAGCACAGTGCATGTGCTTGGAGCATTTACTGGTTCTGCAATGCTTGGACTGACATTAATAAGTACTTCAAATCACCTCTGGTTGGAGTTTTTCTCTGACTCAGAGTCAACAGGCGAGGGATTTAAGCTGGTCTACTCCAGCTTTGAGCTCTCGCATTGTGAAGATCCAGGAGTACCTCAGTTTGGATACAAGATCAGTGACCAGGGCCATTTTGCTGGCAGCACAATTACTTACAGATGCAACCCAGGCTACACACTTCACGGAAGCAGCATCCTCAAATGCATGACTGGAGAGAGAAGGGCATGGGACTACCCTCTTCCCTCTTGTATAGCTGAATGTGGAGGCAGATTCAAAGGGGAATCCTCTGGAAGAATCTTGTCCCCTGGCTATCCCTTTCCTTATGACAACAACTTACGATGCACCTGGATCATAGAGTTTCTTGCATTCGACACTGAGGCATCGCATGATATCTTGAAAGTTTGGGATGGTCCACCTGAGAATGAAATGTCTCTCAAGGAAGTCAGTGGCTCCTTGCTTCCAGAAGGCATTCATAGCACTCTGAATGTGGTGACAATTCAGTTTGAAACAGACTTCTACATCAGCAAATCTGGATTCGCCATTGAATTTTCAAGCTCTGTTGCCACAGCTTGCCGTGACCCTGGAGTGCCTATGAATGGCAGCCGCAATGGAGATGGAAGGGAACCCGGTGATACTGTCACATTTCAGTGTGACCCTGGCTATGAGCTTCAGGGTGAAATGAAAATTACCTGCATTCAGGTGGAAAATAGATACTACTGGCAGCCCAGTCCTCCTGTTTGCATAGctcCATGTGGAGGCAATTTAACAGGATCCTCTGGTTTCATCCTATCACCAAATTTTCCGCATCCATACCCACATAGTAAAGACTGTGACTGGATCATTGCCGTGAACTCAGATTATGTTATTTCCCTTGCATTTATCAGtttCAGCATTGAACCCAACTAtgattttctatatatttatgatgGACCAGACAGCAACAGTCATCTAATTGGTAGCTTTCAAGATAGCAAGCTGCCCGAAAGAATTGAAAGCAGTtcaaatacaatgcatttagCATTTCGAAGTGATGGGTCTGTTAGCTATACTGGTTTTCATCTGGAATATAAAGcTAAACTGCGGGAGTCATGCTTCGACCCTGGTAGCGTAATGAATGGTACAAGACTTGGAAGTGACTACAAACTGGGTTCAACAGTCACATACTACTGTGAGCCAGGTTATGTACTGCAAGGATATTCAACCTTAACATGTATCATGGGAGAAGATGGGAGACCTGGTTGGAACAGAGCTCTGCCAAGTTGCCAAGCCCCCTGTGGGAGTCGCTCAACAGGTACAGAGGGAACAGTCTTGTCCCCCAACTACCCCAGAAATTACACTGCCGGCCACAGCTGTGTGTATGCTATTTCAGTTCCAAGAGAATTT

Function

symbol description
csmd3 Predicted to be involved in regulation of dendrite development. Predicted to be located in plasma membrane.

NR:

description
PREDICTED: CUB and sushi domain-containing protein 3 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021854 True 1647 mRNA 0.45 10 33435316 33453653

Neighbor

gene id symbol gene type direction distance location
AMCG00021857 csmd3 coding upstream 40091 33382419 ~ 33395225 (+)
AMCG00021853 NA coding upstream 135086 32995224 ~ 33300230 (+)
AMCG00021852 NA coding upstream 926991 32500223 ~ 32508325 (+)
AMCG00021851 NA coding upstream 1001378 32418301 ~ 32433938 (+)
AMCG00021844 eif3h coding upstream 1215843 32193277 ~ 32219473 (+)
AMCG00021856 csmd3 coding downstream 21515 33475168 ~ 33537910 (+)
AMCG00021855 csmd3,LOC106570400 coding downstream 94943 33548596 ~ 33586500 (+)
AMCG00021858 NA coding downstream 356821 33810474 ~ 33822086 (+)
AMCG00021859 clptm1l coding downstream 821013 34274666 ~ 34286319 (+)
AMCG00021862 NA coding downstream 851296 34304949 ~ 34323922 (+)
G88838 NA non-coding upstream 557644 32877399 ~ 32877672 (+)
G88833 NA non-coding upstream 629439 32805318 ~ 32805877 (+)
G88776 NA non-coding upstream 1367909 32065283 ~ 32067407 (+)
G88771 NA non-coding upstream 1406150 32028958 ~ 32029166 (+)
G88761 NA non-coding upstream 1446265 31988784 ~ 31989051 (+)
G88867 NA non-coding downstream 257121 33710774 ~ 33711053 (+)
G88872 NA non-coding downstream 307590 33761243 ~ 33761474 (+)
G88882 NA non-coding downstream 391443 33845096 ~ 33845340 (+)
G88884 NA non-coding downstream 457767 33911420 ~ 33911775 (+)
G88887 NA non-coding downstream 504942 33958595 ~ 33959180 (+)
AMCG00021802 kdm1b other upstream 2966396 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 3027544 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 4049991 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 4159969 29264827 ~ 29275347 (+)
G88276 NA other upstream 4369977 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 1472900 34926553 ~ 35077090 (+)
G89142 NA other downstream 1757480 35211133 ~ 35263537 (+)
G89299 NA other downstream 2510918 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 3196579 36650232 ~ 36659244 (+)
G89578 NA other downstream 4667604 38121257 ~ 38151049 (+)

Expression


Co-expression Network