AMCG00021855 (csmd3,LOC106570400)


Basic Information

Item Value
gene id AMCG00021855
gene name csmd3,LOC106570400
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33548596 ~ 33586500 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021855
gTGATTCTTCAGGTACCTGTGGAGACCCAGGCATTCCTGCCCACAGCGAAAGAGAAGAGactgattttaaaatcagaagCAAAGTACGGTTCACCTGTGCAACAGGGTACATTCTGTATGGCTCAGCTGAAAGGATGTGTTTCCCCAATGGAACTTGGTCAGGAAGACAGCCATCATGCAAACTGTGGAAATCCAGGGACCCCAACAAATGGCAGAGTATTCCGCATTGATGGGACAACCTTCTCCCACTCAGTCATTTACTCTTGCATGGAAGGATACTTGCTAACTGGCTCATCTGTGAGGCAGTGTTTGGCTAATGGGACATGGTCTGCGAACCCCCCTAATTGCACAATGATTAACTGTGGGGATCCTGGAATTCCAGCTAATGGACTGAGATATGGGGAGGACTTTTCTATTGggcaaaatattacatttgtctgTCAGCCTGGATATATCATGGAGCCAATAAGTTCCACCATTCGTACCTGCACAAAAAATGGCACGTGGAGTGGCATCATGCCAGCTTGTAAAGCCGTTACCTGCCCTGCTCCACCAGCAATATCCAATGGAATACTGGAAGGAACAGATTTTGAGTGGGGGACCAGTGTCAGCTATAGCTGTTCTTCAGGATATGAGCTTTCTTTTCCAGCAATTTTAACCTGTGTTGGAAATGGAACATGGAGCGGAGAGGTGCCTCAATGTTTGCCCAAATTTTGTGGGGATCCAGGAGTCCCAGCTGAAGGCATGAGAGAGGGAAGGAGTTTCATTTACCAGTCCGAGGTCTCCTTCAGCTGCAATCCTCCATTTATTCCAGTGGGTTCCACCACCAGAATTTGCCAGGCTGATGGAACATGGAGTGGATATCAGCCTCGCTGCATAGAACCCACTCGCACCACATGTGAAAACCCTGGCACTCCACGGTACGGTTCACTGAACAGAACATCTGGTTTTAAGaTTGGGAGTGTGGTGGAGTTTCAGTGTCAGTCCGGCCATCTTCTTCAGGGCTCAACCACAAGAGTGTGCAGGCCAGATCTCACATGGAGCGGAGTGCAGACAGAATGCATCCCTCACACCTGTAAACAGCCAGAAAGTCCCCCTCATGCAAATGTGGTTGGAATGGATCTGCCTTCACTGGGATATACGTTGCTTTACAGTTGTCAGCCAGGCTTTTTTCTATCTGGAGGATCAGAGCACAGAGTTTGCAAGTCGGATGGGACATGGACTGGCAAAATGCCAATATGTCGAGcTGGTTCAAAATTATCAGAGAAAACCATTAAGCCTGTGCCAGGGACACCGAGTCCTAAACTTCatgttcCTGATGATGTATTTGCTCCCAATTACATCTGGAAAGGTTCCTATAACTACAAGGGAAAGAAGCAACCAATGAATTTAACTATAACAAGCTTTAACACAACAACGGGTAGAGTTAATGTAACGTTAACCGACAGTAACATGGAACTGCTGCTTTCAGGAGTTTATAAAAGCCAAGAAGCAAGGTTGATGCTGCTTATGTACCATGCAAAAGCATCATCTTATACTTCTCTGAGCAAGATTAAAGAAGAAACGTGGTCCATGGATGGTTTtGTTTCAGCAGAACCTGATGGTGCAACTTACGTCTTTCAAGGATTTATACAGGGTAAAGACTATGGCCAATTTGGACTACAAAGATtagGTCTAAACTTGTCAGAGAGTAATAACTCTTCAAATCAGCCCCATGGTACAAATAGTAGCTCTGTGGCCATAGCAATCCTTGTGCCTTTTTTTGCCCTGATATTTGCAGGATTTGGATTTTACTTATACAAACAGCGGACTACGCCTAAAACACAGTACACTGGCTGCTCAGTACATGAGAACAATAACGGCCAAGCAGCTTTTGAAAATCCAATGTATGACACCAATGCAAAAGCTGTGGAAGGAAAAGCTGTTCGATTTGACCCTAACCTTAACACAGTCTGCACAATGGTATAA

Function

symbol description
csmd3 Predicted to be involved in regulation of dendrite development. Predicted to be located in plasma membrane.

NR:

description
PREDICTED: CUB and sushi domain-containing protein 3 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021855 True 1968 mRNA 0.45 14 33548596 33586500

Neighbor

gene id symbol gene type direction distance location
AMCG00021856 csmd3 coding upstream 10686 33475168 ~ 33537910 (+)
AMCG00021854 csmd3 coding upstream 94943 33435316 ~ 33453653 (+)
AMCG00021857 csmd3 coding upstream 153371 33382419 ~ 33395225 (+)
AMCG00021853 NA coding upstream 248366 32995224 ~ 33300230 (+)
AMCG00021852 NA coding upstream 1040271 32500223 ~ 32508325 (+)
AMCG00021858 NA coding downstream 223974 33810474 ~ 33822086 (+)
AMCG00021859 clptm1l coding downstream 688166 34274666 ~ 34286319 (+)
AMCG00021862 NA coding downstream 718449 34304949 ~ 34323922 (+)
AMCG00021869 NA coding downstream 820349 34406849 ~ 34413209 (+)
AMCG00021876 fhod3,LOC108413044,LOC102209662,LOC102799816 coding downstream 1010416 34596916 ~ 34607621 (+)
G88838 NA non-coding upstream 670924 32877399 ~ 32877672 (+)
G88833 NA non-coding upstream 742719 32805318 ~ 32805877 (+)
G88776 NA non-coding upstream 1481189 32065283 ~ 32067407 (+)
G88771 NA non-coding upstream 1519430 32028958 ~ 32029166 (+)
G88761 NA non-coding upstream 1559545 31988784 ~ 31989051 (+)
G88867 NA non-coding downstream 124274 33710774 ~ 33711053 (+)
G88872 NA non-coding downstream 174743 33761243 ~ 33761474 (+)
G88882 NA non-coding downstream 258596 33845096 ~ 33845340 (+)
G88884 NA non-coding downstream 324920 33911420 ~ 33911775 (+)
G88887 NA non-coding downstream 372095 33958595 ~ 33959180 (+)
AMCG00021802 kdm1b other upstream 3079676 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 3140824 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 4163271 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 4273249 29264827 ~ 29275347 (+)
G88276 NA other upstream 4483257 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 1340053 34926553 ~ 35077090 (+)
G89142 NA other downstream 1624633 35211133 ~ 35263537 (+)
G89299 NA other downstream 2378071 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 3063732 36650232 ~ 36659244 (+)
G89578 NA other downstream 4534757 38121257 ~ 38151049 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location