AMCG00021856 (csmd3)


Basic Information

Item Value
gene id AMCG00021856
gene name csmd3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33475168 ~ 33537910 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021856
CTGTTTGGGCAGTTTGTACTTTTCCAGACATCTCTTAATGATGTCGTTGATGTGTTCGATGGACCCACTCAGCAGTCCTCCCTGCTGTCCTCCCTCTCAGGATCTCACTCAGgAGAGTCACTTCCTTTAAGTTCAGGCAATCAGATCACAATTAAGTTTACAACAGTTGGTCCTGAAACAGCTAAaggatttcattttgtatatcAAGCTGTTCCCCGGACAAGTGCGACCCAGTGCAGCTCTGTGCCTGAGCCAAGATTTGGAAAAAGAATTGGAAACGATTTTGCAGTTGGCGCAGTTGTTCTGTTTGAATGTAATCCAGGATATACTCTACATGGATCAACGGCTATTAGATGTGAAACTGTTCCCAACGCTTTGGCTCAATGGAATGACTCCCTTCCCACTTGTGTTGGAAAAGTGAGGGATGGCACCGCTGGAGAATGGAGCACATTTGATCCCTACTTAGTGCTTTCCTCTTCCCAGGTGCCCTGTGGAGGAGTTTTAACTAAGCGCAGAGGAACCATTCTATCTCCTGGTTACCCAGAACCCTATGACAACAATTTGAATTGTGTGTGGAAGATTTCGGTTCCAGAGGGAGCTGGAATTCAAATTCAAGTGATAAGTTTTGCTACAGAGCATAATTGGGATTCGCTGGATTTCTATGATGGGGCAGATAACAATGCTCCGAGACTTGGCAGTTATTCAGggACAACAATACCACAACTATTAAACAGCACTTCTAATAACCTGTACTTAAACTTTCAATCGGATATCAGCGTGTCGGCTGCTGGATTCCACCTTGAATATACAGCAATAGGTTTAGATTCCTGTCCGGAACCTCAGACTCCAAACAACGGAATTAAAGTTGGCGACCGATATATGGTTGGGGACGTTGTATCTTTTCAGTGTGAACAAGGCTTTTCTCTGCAGgggaATACCTATATAACCTGTATGCCTGGACCTGTGAGAAGATGGAATTACCCGGTTCCGCTATGTTTAGctcAGTGTGGAGGCTCAATGTCTGACTTCAGTGGAGTCATTTTAAGCCCTGGATTTCCTGGTATTCATCTTCAGTTTATGAATTTCTCAACTGAGGCAATCCATGACTATTTAGAAGTGCGGAGTGGGTCATTAGAGACAGGCACTGTGATTGACAGATTCAGTGGTCCTCAGCTGCCAGATTCTCTCTTCAGCACCACCCATGAAACAAACTTCTATTTCCACAGTGACCACTCTCAAAATAAGCAGGGATTTCACATCACATATCAGGCCTACCAGTTACAAAGCTGTCCTGATCCCCGACCCTTCCGCAACGGGATTGTGATTGGGAATGATTTCAGTGTGGGCTTAACCATTTCATTCGAGTGTCTTCCCGGATATTCCTTGATTGGAGAAGCAGCATTAACTTGTCTCCATGGAGTCAGTAGGAACTGGAACTATCCTGTACCTAGATGTGAAGCTCTCTGTGGGGGGAATATCACATCAATGAATGGCACCATTTACTCTCCTGGGCACCCTGATGAGTATCCAAACTTCCAAGACTGTGTTTGGAATGTGAGAGTTCCTCCTGGGAACGGGATATATATCAACTTTACTGTTTTACAAACAGAGCCAATTTATGACTTCATCACTGTATGGGATGGCCCAGATCTAAGCTCACCTCAGATTGGACAGTTCAGTGGGAATACAGCATTGGAATCAGTCTACAGCACATCAAATCAAATTCTTATCAAGTTTCACAGTGATTTCAGTGGCAGTGGATTCTTTGTACTGAGTTACCATgCATATCAACTGAGAGTTTGTCAGCCACCTCCTGCTACTGCAAATGCAGAAGTACTCACAGACGATGACGAATTTGAAATAGGAGATATAATAAGATACCAGTGTCTGCCAGGATTTACACTGGTTGGGAATGACATTCTCACATGCCGGCTTGGTGAGCGTTTACAGATGGATGGTGCACCACCAACATGTCAGGtgcaGTGCCCAGCCAATGATATGAGATTTGATTCCACTGGAGTTATTCTTAGCCCTGGTTACCCTGACAGTTACCCTAACCTTCAGATGTGTGCTTGGAGTATCACTGTGGAAAAAGGATACAACATCACTCTGTACTTCGAGTTCTTCCAGACAGAAAGAGAATTTGATATTCTTGAAGTTTTTGATGGGCCAAACATTCACAGTCCAACACTGGCTACACTAAGTGGAGATTTCGCTACTCCTTTTAACATTACCACTACTGGGCACCAACTATTTATCCGCTGGTCAGCAGACCATGGGACAAACAAGAAGGGGTTCCGTATCAGATATGTTGCACTTTATTGCAGCACCCCAGAGTCACCCCCTCACGGGTCGATCATTAGCCAGACAGGAGGCCATCTGAACAGCTTGGTTCGCTGGACCTGCGATCGAGGCTATAGACTTATTggaaaaaacactgctgtgtgtAGGAAGACACCCTATGGATATTATACTTGGGATTCTCCAGTACCAGCCTGTCAAgCTGTCTCCTGTGGGGTGCCGAAAGCTCCAGTAAATGGAGGTGTGCTGACTACTGACTATTCAGTTGGTACTCGTGTAACCTACTTTTGTAATGATGGCTACAGGCTCTCATCCAAGGAGCTAACAAGTGCTGTTTGCCAACCAGATGGCACATGGAGCAATCATAATAAAATTCCACGATGCTCAGTGGTTGTCTGCCCCAGTATTGGCTCTTTCTCGCTGGAACACGGGAGGTGGAGGATAGTGAACGGCTCTCATTATGAGTACAGAACTAAGATTATTTTTAGCTGTGATCCTGGTTACTACCGACTGGGACCAGCATCAATCCAGTGCATGGCTAATGGGGTGTGGAGCTGGAGAAATGAGAGACCCCACTGTCAGATTATTTCTTGTGGTGAACTATCAACTCCTCCTAATGGGAATAAAATTGGAACTCAGGCAACCTTTGGAGCTACAGCTATTTTCACCTGTGACACTGGCTACATGTTGGTTGGCTCCACTGTAAGAGAATGCCTTTCATCTGGACTTTGGAGCGGGTCAGAGACCAGATGCCTTGCTGGTCACTGTGGCGTTCCTGAGCAAATAGTTAATGGTCAGGTGATTGGTGAGAACTTCGGGTACAGAGACACTGTTGTGTATCAGTGCATTCCCGGATTCCGCTTGATTGcaaTCAGCTGTGGCCATCCTGGTAGCCCAATTTATGGAAGAACACTTGGCAGTGGATACAATCTTAATGATGTTGTCACTTTCTCCTGCAACACCGGATACATTATGGAAGGACCGACGCGGGCTCAGTGCCAGTCCAACAGACAGTGGAGTCATCCACCACCAACATGTAAagtgGTCAACTGCTCTGACCCTGGAATTCCAGCTAATTCTATCAGGGAGAGTAAGATTGAACATGGCAACTTTACCTTTGGCACTGTGGTATTTTATGATTGCAATCCTGGGTATTACTTATTTGGTTCATCTGTGCTAACCTGCCAGCCTGTTGGCCATTGGGATAAACCATTGCCTGAATGCATCGTCATTGATTGTGGTCACCCCGGATCACCTCCAAATGGCATGTTAACTGGagataaatacacatttggGTCGACAGTGCGTTACTCTTGTGTTGGTGGGAGAGAACTAAAGGGACAGTCTACAAGGACCTGCCAACTGAATGGACACTGGAGTGCACCCATGCCGTATTGCTCA

Function

symbol description
csmd3 Predicted to be involved in regulation of dendrite development. Predicted to be located in plasma membrane.

NR:

description
PREDICTED: CUB and sushi domain-containing protein 3 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021856 True 3702 mRNA 0.46 26 33475168 33537910

Neighbor

gene id symbol gene type direction distance location
AMCG00021854 csmd3 coding upstream 21515 33435316 ~ 33453653 (+)
AMCG00021857 csmd3 coding upstream 79943 33382419 ~ 33395225 (+)
AMCG00021853 NA coding upstream 174938 32995224 ~ 33300230 (+)
AMCG00021852 NA coding upstream 966843 32500223 ~ 32508325 (+)
AMCG00021851 NA coding upstream 1041230 32418301 ~ 32433938 (+)
AMCG00021855 csmd3,LOC106570400 coding downstream 10686 33548596 ~ 33586500 (+)
AMCG00021858 NA coding downstream 272564 33810474 ~ 33822086 (+)
AMCG00021859 clptm1l coding downstream 736756 34274666 ~ 34286319 (+)
AMCG00021862 NA coding downstream 767039 34304949 ~ 34323922 (+)
AMCG00021869 NA coding downstream 868939 34406849 ~ 34413209 (+)
G88838 NA non-coding upstream 597496 32877399 ~ 32877672 (+)
G88833 NA non-coding upstream 669291 32805318 ~ 32805877 (+)
G88776 NA non-coding upstream 1407761 32065283 ~ 32067407 (+)
G88771 NA non-coding upstream 1446002 32028958 ~ 32029166 (+)
G88761 NA non-coding upstream 1486117 31988784 ~ 31989051 (+)
G88867 NA non-coding downstream 172864 33710774 ~ 33711053 (+)
G88872 NA non-coding downstream 223333 33761243 ~ 33761474 (+)
G88882 NA non-coding downstream 307186 33845096 ~ 33845340 (+)
G88884 NA non-coding downstream 373510 33911420 ~ 33911775 (+)
G88887 NA non-coding downstream 420685 33958595 ~ 33959180 (+)
AMCG00021802 kdm1b other upstream 3006248 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 3067396 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 4089843 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 4199821 29264827 ~ 29275347 (+)
G88276 NA other upstream 4409829 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 1388643 34926553 ~ 35077090 (+)
G89142 NA other downstream 1673223 35211133 ~ 35263537 (+)
G89299 NA other downstream 2426661 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 3112322 36650232 ~ 36659244 (+)
G89578 NA other downstream 4583347 38121257 ~ 38151049 (+)

Expression


Co-expression Network