AMCG00021857 (csmd3)


Basic Information

Item Value
gene id AMCG00021857
gene name csmd3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33382419 ~ 33395225 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021857
ATTGATAAGGAAAGTTGTGGGGACCCAGGGACACCTTTATATGGCATCCGGGAAGGCAGCGGATTCTCCAATGGCGATGTACTGCGATTCGAGTGCCAGTTTGGGTTTGAACTTATTGGAGAAAGATCCATCTCTTGTCAGAACAACAACCAGTGGTCTGCAAACATACCAATCTGCATATATTGCAAgattCCTTGTTTATCTAATTTCACTGCACCCATGGGGACTGTACTTTCCCCGGATTACCCAGAGGGCTATGGGAACAACATGAATTGTGTCTGGCTTATCATCTCCGAACCAGGGAGCAGAATTCACCTGGCCTTTAATGACTTTGACTTGGAGGCACCATATGACTTTCTCACTGTGAAAGATGGAGAACAACCAGACTCAACTGTTCTGGGTAGATTTACTGGGGCAGAAGTCCCATCCCACCTCACAActTTTGGACACAATGAATGCCCTGATCCCGGGATACCTATAAATGCTCGTCGATTTGGTGACAATTTCCAGTTAGGTAGCTCCATTTCTGTCATTTGTGAAGAGGGATTTATCAAAACCCAAGGAACAGAAACCATCACTTGTGAATTGGATAATGGAAAGGTAATGTGGAGTGGACCCATTCCAAAATGTGAAGCACCTTGTGGTGGGCATTTCTCTGCTCCCAGTGGAGTGATACTGTCTCCAGGCTGGCCTGGATATTATAAAGACTCTCTCAACTGCGAGTGGGTGATTGAAGCAGAAATGGGACGctccattaaaattacatttgacagATTTCAGACTGAGCTAAATTATGACTTTTTAGAAATTCATGATGGGCCTAATCTCCTTTCCCCACTTATCGGCTCTTACAACGGAACTCAAGTCCCTCAGTTTCTGTTTAGCAGCAGCAATCATCTGTATCTACTCTTCACCACAGATAACAGTCGTTCGAATAGTGGTTTTAAGATCTTCTATGAAAGTGTTACAGTTGATACGTATTCGTGCTTGGATCCAGGAATACCAGTCAATGGACTTAGATATGGACAGGACTTCTCCATTGGATCAACTGTGTCCTTTGGTTGTGATCCAGGTTACAGACTAAACCATGAAGAGCCTCTTGTA

Function

symbol description
csmd3 Predicted to be involved in regulation of dendrite development. Predicted to be located in plasma membrane.

NR:

description
PREDICTED: CUB and sushi domain-containing protein 3 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021857 True 1104 mRNA 0.44 7 33382419 33395225

Neighbor

gene id symbol gene type direction distance location
AMCG00021853 NA coding upstream 82189 32995224 ~ 33300230 (+)
AMCG00021852 NA coding upstream 874094 32500223 ~ 32508325 (+)
AMCG00021851 NA coding upstream 948481 32418301 ~ 32433938 (+)
AMCG00021844 eif3h coding upstream 1162946 32193277 ~ 32219473 (+)
AMCG00021850 NA coding upstream 1236393 32138572 ~ 32146026 (+)
AMCG00021854 csmd3 coding downstream 40091 33435316 ~ 33453653 (+)
AMCG00021856 csmd3 coding downstream 79943 33475168 ~ 33537910 (+)
AMCG00021855 csmd3,LOC106570400 coding downstream 153371 33548596 ~ 33586500 (+)
AMCG00021858 NA coding downstream 415249 33810474 ~ 33822086 (+)
AMCG00021859 clptm1l coding downstream 879441 34274666 ~ 34286319 (+)
G88838 NA non-coding upstream 504747 32877399 ~ 32877672 (+)
G88833 NA non-coding upstream 576542 32805318 ~ 32805877 (+)
G88776 NA non-coding upstream 1315012 32065283 ~ 32067407 (+)
G88771 NA non-coding upstream 1353253 32028958 ~ 32029166 (+)
G88761 NA non-coding upstream 1393368 31988784 ~ 31989051 (+)
G88867 NA non-coding downstream 315549 33710774 ~ 33711053 (+)
G88872 NA non-coding downstream 366018 33761243 ~ 33761474 (+)
G88882 NA non-coding downstream 449871 33845096 ~ 33845340 (+)
G88884 NA non-coding downstream 516195 33911420 ~ 33911775 (+)
G88887 NA non-coding downstream 563370 33958595 ~ 33959180 (+)
AMCG00021802 kdm1b other upstream 2913499 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 2974647 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 3997094 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 4107072 29264827 ~ 29275347 (+)
G88276 NA other upstream 4317080 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 1531328 34926553 ~ 35077090 (+)
G89142 NA other downstream 1815908 35211133 ~ 35263537 (+)
G89299 NA other downstream 2569346 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 3255007 36650232 ~ 36659244 (+)
G89578 NA other downstream 4726032 38121257 ~ 38151049 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G230150 NA non-coding CI01000054 null 657681 ~ 670511 (-)