AMCG00021858


Basic Information

Item Value
gene id AMCG00021858
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33810474 ~ 33822086 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021858
CTGGGGGTTAAATGCATCTCTGACCAGGAGCATCAATTCCTGAAGCCCCTCACTGTGGCATTGGACATCTTGCAAGGGGAGGATAACTGCTTCTACAGTACTCTGCTACCAACATTGGAAATCTTGATGACCAAGACACTAGCACTGAAGAACGGTCTTTCTCGAATGACAGCTGGCATACCTGATGCCATAGTACAGGTAGGACTACAGCAATCGAGATTCGATTTGCATCAATCTTGGAAATCAAAGAGGCTCTGCTGGCTGCTGTTACATTGCCGAAGTTTCAGCTGTGTTGGTTACGAGAGGAGGAAAGGAGGGAAATGGTTAGGGGACTGCTGTCTGCGGAGTGTCGCAGTCTTTCCCGAGGAGCAACAGGCAAGGCCTGCCCCAGTGGCCTCAGTCTCATCCAGCGAAAATGACTTCTTTGCCTTTGATGGGAACAATACAGACATTATATCAGACACAGAAGTGATGGACTATTTGAAGTCTGGATTGGGGATGGAGATCCTGAACCAGTttcctaaattaaaaataatctcatTGAGATACAACAGACCAACCCCTTCCAGTGCTCCAGCTGAGAGACTCTTCAGAGTCTCCAAAGAGAAACAGGCTCAACATTTCCATGTGGATTTGCCCGCATTCCTCTTCAGAATTGCCCACACCTGTGCCCTTGACCCGAGTGCTGGCTATATCAGTGTGAGAGCAGTGGTGTTGTGGTGTGTGCCTGACTGCCCGCCGGAGAGAGCTGGGGACAGCAAAGAGGAGTTTGGTGCCCCACGCCGCATGCCCCTGCCTCCGCGCCTTGTGACCCCATTGCCAGGACAGAGCGGCCCCAGTCATCTCAGTAAGGAGAGAAGCATTGGCAGGAGCAGCAGCCGGGTGAGACTGCGCTCCCTTGGATTACTGGGAATAGAAGAGCGGGGAGACGGCAGTGTTCAGCAGCATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021858 True 951 mRNA 0.51 3 33810474 33822086

Neighbor

gene id symbol gene type direction distance location
AMCG00021855 csmd3,LOC106570400 coding upstream 223974 33548596 ~ 33586500 (+)
AMCG00021856 csmd3 coding upstream 272564 33475168 ~ 33537910 (+)
AMCG00021854 csmd3 coding upstream 356821 33435316 ~ 33453653 (+)
AMCG00021857 csmd3 coding upstream 415249 33382419 ~ 33395225 (+)
AMCG00021853 NA coding upstream 510244 32995224 ~ 33300230 (+)
AMCG00021859 clptm1l coding downstream 452580 34274666 ~ 34286319 (+)
AMCG00021862 NA coding downstream 482863 34304949 ~ 34323922 (+)
AMCG00021869 NA coding downstream 584763 34406849 ~ 34413209 (+)
AMCG00021876 fhod3,LOC108413044,LOC102209662,LOC102799816 coding downstream 774830 34596916 ~ 34607621 (+)
AMCG00021873 fhod3 coding downstream 802962 34625048 ~ 34678756 (+)
G88872 NA non-coding upstream 49000 33761243 ~ 33761474 (+)
G88867 NA non-coding upstream 99421 33710774 ~ 33711053 (+)
G88838 NA non-coding upstream 932802 32877399 ~ 32877672 (+)
G88833 NA non-coding upstream 1004597 32805318 ~ 32805877 (+)
G88776 NA non-coding upstream 1743067 32065283 ~ 32067407 (+)
G88882 NA non-coding downstream 23010 33845096 ~ 33845340 (+)
G88884 NA non-coding downstream 89334 33911420 ~ 33911775 (+)
G88887 NA non-coding downstream 136509 33958595 ~ 33959180 (+)
G88927 NA non-coding downstream 333335 34155421 ~ 34155966 (+)
G88937 NA non-coding downstream 354303 34176389 ~ 34176706 (+)
AMCG00021802 kdm1b other upstream 3341554 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 3402702 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 4425149 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 4535127 29264827 ~ 29275347 (+)
G88276 NA other upstream 4745135 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 1104467 34926553 ~ 35077090 (+)
G89142 NA other downstream 1389047 35211133 ~ 35263537 (+)
G89299 NA other downstream 2142485 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 2828146 36650232 ~ 36659244 (+)
G89578 NA other downstream 4299171 38121257 ~ 38151049 (+)

Expression


Co-expression Network