AMCG00021859 (clptm1l)


Basic Information

Item Value
gene id AMCG00021859
gene name clptm1l
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34274666 ~ 34286319 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021859
CAGACCCGGAACAGCAGTATTTTCGAGTCCCATGCTTAGCTCTAGCGACTGGCAACAGAAGGTAAAGACTgacttatacaattaaataaattaatgatttgtTACAATTCAATTCCTAACCGATTGATCGGCTGCGTACAATAATTACGTAAATAAACGAAATATGGGTCCTTAATTCTACAAACAAAAATCACCGGACCTTGTTTTAGCTGTAGCTGTCTTTGCAACGAGCTACACTGGTTTTGACATTCACGTTTTATATATGTTCCCTGCATGTTattccaaaaacaaaagcatgtttcAAAAGACGTCTTTTACTACCCTGATCATCGGGGTGTTCATAGTTTATGTATTGCACACTTGCTGGGTGATGTATGGAATCGTTTACACCAAACCTTGTGAAAAAATCAAAGGCGAAACCTGTATTACGTCTTACCTAAATGAGAAACCCCGACTACAGCTCAGCATTTACACATCTTTGAAGCATACTGGCGATGGCAGTCAAAACCTCATCCTGAGCATTGAAGACTTTGACATACATTCTAAGTTTGAGAGgAAAGTAAATGTTTCCATTCCAAAGAAGACCAGAAACAATGGAACCCTGTACACATTTGTGTTCATCCACCAGGCTGGGGTGTCTCCTTGGCATGACAGCAAGCAGGTCCACCACATTGCCCAACTGACCACTTACATGGTGCCTAAACCCCAGGAGGTTAACCTCATAACAGGGGAGGACACCTCACAGCACTCAGAGCcacagaagaaaacaagcaaTATGCCAGATAGGCCAATCACTCATTGGAGGTCTCGGCTCACTCTTAACATCATGTCAGATGGATTTGACTTTGACAAAGAAGCTCTTCCTAGTGATGTACATCGATACATGAGAGTGATTCAGTATGGGAAGAAAATGCTGTATCTTCCCATATTATTCATTGATGAACTGAGTAATCGAGTAAAGGATTTAATGGTCATAAACAGTTCGACAGCTGAACTTCCTCTCACAATTTCATATGATAAAATTTCACTGGGGAAACTCAGATTCTGGATTCATATGCAGGATGCTGTTTACTCCTTACAGCAGTTTGGTTTCACAGAAAAGGATGCAGATGAGATTAAAGGAATATTTGTGGACACCAACTTGTATTTCTTAGCCTTGACCTTTTTTGTGGCAGCCTTCCATCTCCTGTTTGACTTCCTtgcctttaaaaatgaaatcagcTTTTGGAAGCAGAAGAAGAGCATGGTTGGGATGTCAAGTAAAGCAGtATTATGGAGATGTTTTAGCACCATTGTCATTTTCCTATACTTGCTGGATGAACAAACAAGTTTGTTAGTCCTTATACCAGCTGGGATTGGCTCTTTGATTGAGGTCTGGAAAGTGAAGAAGGCTTTTAAGATTCAAGTTATATGGAAAGGCTTAAAACCCACATTCCagCTTGGAAAATCTGATGAATCAGAGAGAAGAACTGAGGAATATGACACTCAGGCAATGAAATATCTGTCCTATTTACTCTATCCTTTGTGTATTGGAGGGGCTGTTTACTCTTTGCTTTATGTTAAATACAAAAGTTGGTATTCCTGGCTGATCAACAGTCTTGTCAATGgagTTTATGCATTTGGATTCCTGTTCATGCTACCTCAACTTTTTctaAAATCAGTGGCTCATTTGCCATGGAAGGCATTTATGTACAAAGCGTTCAACACATTCATTGATGATGTATTTGCGTTTATTATTACTATGCCAACATCCCATCGGCTTGCCTGCTTCAGAGATGATGTAGTGTTCCTTATCTACCTTTATCAAAGATGGCTTTACCCTGTGGATAAACGAAGAGTCAATGAGTATGGAGTATCGTATGATGAGGAGCCTAAAGGAAAGTCACATAAAGACTAAACACACCTGACAGTGGGGTTGAGGCCTCTTGGCTTCCACACTACAGAGGTGTACGCAATGGTAGaaaatgtttctaaaacaaAAGTGCACCGCAACTACTGCAGTGTTGCTGACCTGTCCAACAATGTGCCTAATGGGAAAGATAGGGCTGCCACCATTAGTGCATGGGTTTCACTAACTGCTGGCCAATATTGACTCAGGAGGGGCCAACAATAGCCATCGCCTGTAGAGAAGCATGAAGCCAATCCTGCCTGCTCTTCTCCCCTAGCATGAGGCGATTTAGACAAGCTTTTTAAAGACCATTCAGGgatattgaattgaatattgaatagctttgctaaaaaacacaaaagtaattATAGCAGTAGGTGCAGcacaaatagaaacatattctactcatttttttcttctcactatagtatttaaaatttgaaagGGTAGTGCCAAAATGATTGACAAGAAAAAGTACATAAGGTTCAAGATGTATATGTattctattaatatttttttggacacattaatacatattgtttcagTACTCATCAATGCCAATCCTGAACTACTGAGATACAGTAACCATTACTTTATCATAATATGGGTTATGCTTGAGGATGAGAAAATGGCATAAATATAATCTGAGTCAATGTCCGGGAATAGACTGTATAATGGGCCTGTATTCAGGAATTCCAAGGTGTGTTTCGGTTTATAATTCATGTCAATTTTATGTTGGTAAATGAATGCcggcaaaatgtattttctttcatgtttttttttcttgatcaTCAATAACAAGTGcttgttaaaatgaattaaaattgGGATCATTGTCTTCTGAAATCATGTATTGTAACTGCTCTACATTCCAAGCAGCGTTTTAATAAGTTTAAGaacttgcatgtttttgtttcctttcattctATGTGTAACCATTAAGGTTTACTTGCAGCAGAACTCTCAGTTTAGTGCAATACAGTAAACTCGTAAGACAAAGAATTGtactacttctaataatatTGCATATCCAAAGCCTGCTTGAGATgtggaaatacaaattaattgtaCTACTCTCCTAAGAAAGTACCACTTACTTTTCTTTGTCAAAAACTAatattgaacaaaatgtaaatatttagatGCAAAGTTTCATTTCGCTGTCTTCTTAACAATGTGCATCAAATGTTAGAATGATTCTTGTATTCCGGACAGCATCTGTTGATGTCATCGAATAATGTCTGCCATGCTCGgctgtatttttaaaggttATAAGATTAAATGTCACCTCTTAAATACAGCAAATTTCATTAAACCAAGACTGTTCATCTA

Function

symbol description
clptm1l Predicted to act upstream of or within apoptotic process. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and membrane. Orthologous to human CLPTM1L (CLPTM1 like).

NR:

description
cleft lip and palate transmembrane protein 1-like protein

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021859 True 3220 mRNA 0.38 17 34274666 34286319

Neighbor

gene id symbol gene type direction distance location
AMCG00021858 NA coding upstream 452580 33810474 ~ 33822086 (+)
AMCG00021855 csmd3,LOC106570400 coding upstream 688166 33548596 ~ 33586500 (+)
AMCG00021856 csmd3 coding upstream 736756 33475168 ~ 33537910 (+)
AMCG00021854 csmd3 coding upstream 821013 33435316 ~ 33453653 (+)
AMCG00021857 csmd3 coding upstream 879441 33382419 ~ 33395225 (+)
AMCG00021862 NA coding downstream 18630 34304949 ~ 34323922 (+)
AMCG00021869 NA coding downstream 120530 34406849 ~ 34413209 (+)
AMCG00021876 fhod3,LOC108413044,LOC102209662,LOC102799816 coding downstream 310597 34596916 ~ 34607621 (+)
AMCG00021873 fhod3 coding downstream 338729 34625048 ~ 34678756 (+)
AMCG00021875 NA coding downstream 398696 34685015 ~ 34690667 (+)
G88938 NA non-coding upstream 97188 34176954 ~ 34177478 (+)
G88937 NA non-coding upstream 97960 34176389 ~ 34176706 (+)
G88927 NA non-coding upstream 118700 34155421 ~ 34155966 (+)
G88887 NA non-coding upstream 315486 33958595 ~ 33959180 (+)
G88884 NA non-coding upstream 362891 33911420 ~ 33911775 (+)
G88980 NA non-coding downstream 83651 34369970 ~ 34373665 (+)
G88981 slc6a19b,LOC106570715,LOC107596751,LOC107743232,LOC107685553,LOC107662664 non-coding downstream 97640 34383959 ~ 34386202 (+)
G89006 NA non-coding downstream 100935 34387254 ~ 34387672 (+)
G89010 NA non-coding downstream 133472 34419791 ~ 34420057 (+)
G89222 NA non-coding downstream 1120391 35406710 ~ 35406984 (+)
AMCG00021802 kdm1b other upstream 3805746 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 3866894 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 4889341 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 4999319 29264827 ~ 29275347 (+)
G88276 NA other upstream 5209327 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 640234 34926553 ~ 35077090 (+)
G89142 NA other downstream 924814 35211133 ~ 35263537 (+)
G89299 NA other downstream 1678252 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 2363913 36650232 ~ 36659244 (+)
G89578 NA other downstream 3834938 38121257 ~ 38151049 (+)

Expression


Co-expression Network