AMCG00021862


Basic Information

Item Value
gene id AMCG00021862
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34304949 ~ 34323922 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021862
catgcatgcgtgtAGTGATTAACAGTGTGTGGTAGAGGGTGTTCACAACGAATGTACTTTTTTGTAGCATCATGTCTATTACACAGCATCAAGATTTTGAGCAAGTATTGGGGATATTGAGATCTCTGTATTCACATGTGCAGACGCTACAGGAGTACATTGCCAGTGTTCGTTTTGTAGAAGGCAATAGGCAACCCTTGGTGTCTAAAACAGACGGCGACAAATACAAGAAGTTCATTGCAAACATCATTGTCTGCAGGTCAGCCGACAGTAAACCTTTGGTTCAACCTGCCAGTTTTGAACAGCTTAGTACCCTAAAAGATCAGGTCACCTACACACTGAAGAACATCTGTGATAAAAGGAAGAGGAATGTGTTGGCCCATGGACTTGCCAGTGTTGGAGAAAGCAGTGCGTCCAGCTTGTCATACCAGCTAGGCCACAGCACCTCTGCAGTCAGCAGCAGCCCCCTGTGGAACATGTTACTGAGACGACTGGGCACTGCTGTGATGAAGCATCTTTTGGAATGCTGTGCGCTCTTCACTGCGGTGCCCCCCTCCTGCATGTTTCAAGTTTCTGGGGTTCCTGTGTATGATGCATTCTCCCCTGGGACTCATTACTCATTTAAATGTGCCAGGTTGAGGTCACCACAAAGCAGATCTAATATTCTTTTGATGCTGgctaaaacaaaattgaatttcTACAAAAAGCATAAGAAGAAGTCAAGACAAGGGCCAAGGAGAAGTCTGAAAAGTAGGGCATCTAAACGTACCAGTAAAAGTGACCTCGGAAGCCCCCCAGCCAAAAAGTTTAAGATGGATCCTGAGCTTGCTACTGTGGAGACTAAAACAACACCTCCAAAAGCCCCAAAACACGCAGCTTCccctttgtctgttttattcaaaATGCACTGCATGTTGTACTCTGGCCGACGTGTCAAGTCTTTAATTTTTACCAAAGGACAGAAGAAACAATGGAATGGGTTGGAAACTGAGACGCAGACCAGCTTAACTGCAGAGGGCCTTGTGAAAGACATATTTTTGCAGGGAGAGAGCTTTGGCAAAAAGAGTTTACCGAAACGCTTCCGCAACATGCTTGGCATCTTCGCTCAGTTACTAACGAAACATAAGAAGTGTAGCTATGTTCGGCTGCTGAGGAAGAATTGCTCCGATGGCTTTCGACGGGTTCCTGAACACCGAGCAAGCTCGGACTCAAGCGACCAGGAACGTGACTTTAATGCGCTTCTCAGGCAGTATAGCAGCCCCTTCCAGGTGTATATGTTTGTTAGGGAGTGCTTACATGTTGTCTTCCCACACGAACTGTGGGGTTCTAACCACAATCGAAGCCGCTTCCTCGTGAACTTGAAGAAGTTTCTACTCATGGGGAAGTTTGACACGTTGACGCTGTTGGAAGTTTTGTGGAAGATGAGGGTTAATGATTGCGACTggctaaaattaaacaaaaatgCTTCTTGCCCTGCCATTGAACACCGAAGCCGTGAGAGGATATTGGGACAGTTTTTATCCTGGGTTTTGGAGTCCTATGTGGTTGGGTTATTGAAGTCCTTTTTTTTTGCCACGGAGAGTGCTGGACAAAAAAATGCCCTCAGATTCTACAAGACCTGGGTGTGGAGAAGACTGCAGAGCATTGCCTTTGGcaaATACTTGTTGAAAGGAAAATTTGAGCTTGTAAGCCCAGAGGAACTCAGAAAGCACAAAACTCCAGTGCTGAAAGTACGTTTCATCCCAAAGCCAGATGGAATGCGGCCTATTGTTAAAATGGGTAGAACGAGGGACTCGATCAGTGAGCAGAGCAGATGGAAAAAGGTTGATGTAGCCAGTGCTTTTGACAATCTCCCACATGACAAACTGTTGGACATAGTGTCTGACATTTTATCTCCTGTAATGGATGAGGAGTACAGCATCAGGCGGTATGCCCAGATCTGGCCTGACACCAATGAAGGGCTGAGAAAATCATTCAAAAGACATgcCACAACGTTGGGCGAATTGTTGCCAAACATGAGGTCATTTACAGCTGCACAGCAAGAAGAAACCAATTTGCGGAATGCAATACTGGTTGAACAGGGCCTTTCAACTGATGTATTTGGTTGCAATCTGCTTAAATTCTTCAAGGAGATGCTTGAGAACAGTGTACTTCAGATTGGGAAAAAGTGTATGTTGAGATTGATAGATGACTTTTTGCTCATCACTCCACACCTATCCAAAGCACAGACCTTTCTCAGAATACTTGCAGCAGGGGTACCGGAGTATGGCTGCTTCATTAACCCTCACAAGACTGTAATCAACTTCCCCATTGATGACATTCCAAACTGCTCTGGGGTCAAACAGTTGCCACCAGCATGCCTGTTTCCTTGGTGTGGCCTTCTAATGGACACTAGTTCACTTGACATCTACTATGACTACAGAAGttATGCTGGAGTATCCATTCGCTACAGCCTGACCCTCGGTTCCACGTCTCATCCTGGGCAGCACATGAAGAAGAAACTCATGTCtattctgaaactgaaatgcCACGCTATTTACCTTGATCTGAAGATCAATAGTGTGAAGGCTGTGTACCTCAACATTTACAAGATATTCCTGATTCAAGCCTACAGGTTCCACGCCTGTGTAATAAACTTACCATTCGGCCAGAAGGTCTGCGATAATCCCAGCTTCTTTCTAACAATGATTTCTGCAATGGCAATTTATGGCTTCTCAGCTGTGAGGCTGATAAACAAAGAAATCCCCCATGGGTTTAAAGATACCTCTGGCCCTCTGCCTTATGAAGCTGTGCAGCTGCTGTGCTACTGTGCATTCCTTGTGAAATTATCTAGGCACAGATGCGTGTATAAATGCCTTCTTGGAAGCCTCAACACATGTAAGCGACGACTGGACAGGAAGCTCAGAAAGGAGACATTGCATCTTATCAGACAGGTCACTGATCCCCCTGTGCCTCCAGACTTCACCCTCATTATAGTTTAAGATCATTATGTTAACTCTAGTAAACCACTTGAAATAACTAGTACTGTAAACCTGCATGTATTCCTGCTGAATTATAGAGGTGCTCCgttccctgctaacacacaatgttgccacaacgttgtagcagcgttgtgtgttagctgggttatcTTCTGAAAAAGTGGAATCTTCAAACTTGGGATAGTCATTGAAAATTTAAATCCTTAAATATCCAGGGAAAAACatggaaatcaataaataaataaataaataaatattgtggcTATTGTATACCAACATTGCAGTGATGATAAGGCTTAATGTCAATATTTACCTTAGACAGCTGATCAAAATTGTTGGTAAATGAATGGTTGTGAAAAGGGGGAAAgggtctgtttgttttgaggGGTTGTGTCtatgtgtattattatagcAAACGGGTGAAATACAGATCTAATTTGAACTGTGAAAGGGTATTCCATGATACTTCAGGTCTTTAAGGAAAACATGATAGTTACATAATGCATCACCAGAGTAATTGTATCACAAACCTTGTATAGTtgactgcaaatcatgacattatcttgattttctttttttctttttttaatggacacaGCATTATACTGTACATTGTTACTGCATCAAGGCAGTTATGCTTCGATTTGGcacataaatgtatttcttggaAAAATAGTGATACAAATGTCTATTttcttattagtattaaaatatttgtatttgttaaggTTTATTGTGGCTAGTAAATCCAGTTTTAATGCTTAATAAATCTGGAAAATCTGGATGTGGATATGGAAAATCTGACTTGAAGGCCTAAAATAGCTGAAAACGACTTTGAATACAGCCAATGAGCCCTTCTTATGACTAAATAACTAAGTGTCAAAGTCTAGTACCACAAATATCttgggggaaagaaaatgtatttccctgGAGATCTGACTGATCCATTTTTCGTTTGAGTGTAGTATTTCAATATTCTTGTTCCTCTGTTCTATTTAcatgttgtatttgtgtttgtattttgtctattttttgtttattaaattgtaaattgtcttTCAAGTCCTTCAATCCCAGTTTCTCCTTGACCCATCATGGCTGTAAATTGAAAAAATTgttgagatttatttatttatttatttattttatacaaaag

Function

GO: NA

KEGG:

id description
K11126 TERT, EST2; telomerase reverse transcriptase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021862 True 4137 mRNA 0.42 14 34304949 34323922

Neighbor

gene id symbol gene type direction distance location
AMCG00021859 clptm1l coding upstream 18630 34274666 ~ 34286319 (+)
AMCG00021858 NA coding upstream 482863 33810474 ~ 33822086 (+)
AMCG00021855 csmd3,LOC106570400 coding upstream 718449 33548596 ~ 33586500 (+)
AMCG00021856 csmd3 coding upstream 767039 33475168 ~ 33537910 (+)
AMCG00021854 csmd3 coding upstream 851296 33435316 ~ 33453653 (+)
AMCG00021869 NA coding downstream 82927 34406849 ~ 34413209 (+)
AMCG00021876 fhod3,LOC108413044,LOC102209662,LOC102799816 coding downstream 272994 34596916 ~ 34607621 (+)
AMCG00021873 fhod3 coding downstream 301126 34625048 ~ 34678756 (+)
AMCG00021875 NA coding downstream 361093 34685015 ~ 34690667 (+)
AMCG00021874 rprd1a coding downstream 375926 34699848 ~ 34716167 (+)
G88938 NA non-coding upstream 127471 34176954 ~ 34177478 (+)
G88937 NA non-coding upstream 128243 34176389 ~ 34176706 (+)
G88927 NA non-coding upstream 148983 34155421 ~ 34155966 (+)
G88887 NA non-coding upstream 345769 33958595 ~ 33959180 (+)
G88884 NA non-coding upstream 393174 33911420 ~ 33911775 (+)
G88980 NA non-coding downstream 46048 34369970 ~ 34373665 (+)
G88981 slc6a19b,LOC106570715,LOC107596751,LOC107743232,LOC107685553,LOC107662664 non-coding downstream 60037 34383959 ~ 34386202 (+)
G89006 NA non-coding downstream 63332 34387254 ~ 34387672 (+)
G89010 NA non-coding downstream 95869 34419791 ~ 34420057 (+)
G89222 NA non-coding downstream 1082788 35406710 ~ 35406984 (+)
AMCG00021802 kdm1b other upstream 3836029 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 3897177 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 4919624 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 5029602 29264827 ~ 29275347 (+)
G88276 NA other upstream 5239610 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 602631 34926553 ~ 35077090 (+)
G89142 NA other downstream 887211 35211133 ~ 35263537 (+)
G89299 NA other downstream 1640649 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 2326310 36650232 ~ 36659244 (+)
G89578 NA other downstream 3797335 38121257 ~ 38151049 (+)

Expression


Co-expression Network