AMCG00021867 (LOC107596751,LOC107685553,LOC107743232)


Basic Information

Item Value
gene id AMCG00021867
gene name LOC107596751,LOC107685553,LOC107743232
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34260004 ~ 34356907 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021867
GGGCGTTCATGATTCCATTCCTAATCCTGCTTGTCCTCGAAGGAATCCCATTGCTGCACCTGGAGTTTGCAATTGGCCAGAGACTAAGGAAAGGCAGTGTTGGTGTGTGGAGCACCATTCACCCTTATCTTTTGGGAGTGGGAGTCCATGACATTTACACCTCCGTTGTAAAAGTTCAAGCCTTAGGtaaTAATTGTGAGAAGGATGCTGTCATCGTTTCCATCATCAACGGCCTAACATCCATTTACGCTGCCACTGTAATATACTCCATCATCGGATTCCGAGCAACTGAGAGATATGACGACTGTGTTAATGGAAATATTCTGACCCTAATGAACACTTTTGATCTGTCTGAAGCTAACATTACTGAACACACCTACAATGATGTTCTCGGACAACTGAACAGCACATTTCCAGCGGTCATTCAAAATCTTTCTCTTAAAACCTGTGACCTCAATAGTTTTCTAAGTGAAgGTGTGGAAGGAACTGGCCTTGCATTCATCGTCTTCACTGAAGCAATTACTAAGATGCCAGTGTCCCCATTGTGGTCCATTTTGTTCTTTATCATGCTGTTCTGTCTCGGTCTGTCATCCATGTTTGGCAATATTGAAGGAGTCATTGTGCCTCTTCAGGACTTAAAGGCTTTTCCCAAGTCATGGCCCAAGGAGCTCATAACTGgcaCCATATGTCTGGTGTGTTTTCTGATCGCCTTGATATTTGTCCAGCAATCTGGGAATTATTGGCTGGCGCTGTTTGACAGCTTTGCTGGGTCCATTCCTCTGCTGATCATTGCTTTCTGTGAAATGGTTGGAGTGGTGTACATTTATGGAATAGACAGG
>TU111017
NNNTCTTGGCTGAGGTGAACTACATAATAGGGCAGGTTTTGCTTGTGCAGGAGTCCATGACATTTACACCTCCGTTGTAAAAGTTCAAGCCTTAGGGTGCTTTTGTTTCCAGTTAGATCTCACAGGACTCCTCCCATCATCTTTAAGGTTACATTAAGTGAAAGTCCAGTGCATTGAATAACAAGGTTGTTAATAAATGGCTTCAAACACCTTGTATCTTAGTTTCAGAAGACTTTACTCTTCATGCCTTCTTCTCTGTCATTCATATTCACCATGGCAGAAATGGTTGTGAGGACTTGTTGGTCTTCTGGTTTCCGGCAGCAATTCCTTATGActttaaataa

Function

NR:

description
PREDICTED: sodium-dependent neutral amino acid transporter B(0)AT1-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021867 True 839 mRNA 0.44 6 34348042 34356907
TU111017 False 344 lncRNA 0.40 2 34260004 34353710

Neighbor

gene id symbol gene type direction distance location
AMCG00021864 NA coding downstream 10357 34242865 ~ 34249647 (-)
AMCG00021860 LOC107748562 coding downstream 70478 34179592 ~ 34189526 (-)
AMCG00021861 NA coding downstream 245114 34006659 ~ 34014890 (-)
AMCG00021845 NA coding downstream 2162485 32095525 ~ 32097519 (-)
AMCG00021846 NA coding downstream 2212420 32047110 ~ 32047584 (-)
AMCG00021870 NA coding upstream 388796 34745703 ~ 34757627 (-)
AMCG00021878 grina coding upstream 409945 34766852 ~ 34784712 (-)
AMCG00021879 NA coding upstream 433361 34790268 ~ 34809602 (-)
AMCG00021877 vps28,LOC107696523,LOC107592928 coding upstream 454249 34811156 ~ 34820379 (-)
AMCG00021885 kif13a coding upstream 954382 35311289 ~ 35351633 (-)
G88939 NA non-coding downstream 82523 34177047 ~ 34177481 (-)
G88918 NA non-coding downstream 279176 33976080 ~ 33980828 (-)
G88883 NA non-coding downstream 414552 33845114 ~ 33845452 (-)
G88873 NA non-coding downstream 498530 33761242 ~ 33761474 (-)
G88871 NA non-coding downstream 499384 33760272 ~ 33760620 (-)
G89011 NA non-coding upstream 62853 34419760 ~ 34420279 (-)
G89130 NA non-coding upstream 722666 35079573 ~ 35081173 (-)
G89212 NA non-coding upstream 1013199 35370106 ~ 35370480 (-)
G89240 NA non-coding upstream 1048150 35405057 ~ 35405340 (-)
G89247 NA non-coding upstream 1097660 35454567 ~ 35455198 (-)
AMCG00021849 NA other downstream 2190540 32063385 ~ 32069464 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other downstream 3127819 31129583 ~ 31132185 (-)
AMCG00021820 NA other downstream 3371416 30877848 ~ 30888588 (-)
G88527 NA other downstream 3835392 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 4517196 29730077 ~ 29742808 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 21794 34378701 ~ 34388010 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other upstream 1018109 35375016 ~ 35395771 (-)
G89368 NA other upstream 1586845 35943752 ~ 35946984 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other upstream 2057972 36414879 ~ 36438350 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other upstream 2167602 36524509 ~ 36537718 (-)

Expression


Co-expression Network