AMCG00021868 (slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020)


Basic Information

Item Value
gene id AMCG00021868
gene name slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34378701 ~ 34388010 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021868
GGGCGTTCATGATTCCATTCCTAATCCTGCTAGTCCTCGAAGGAATCCCATTGCTGCACCTGGAGTTTGCAATTGGCCAAAGACTAAGGAAAGGCAGTGTTGGTGTGTGGAGCACCATTCACCCTTATCTTTTGGGAGTGGGTATAGCATCCATGTGTGTCTCTTTCCTGGTGGGTCTGTATTATAACACCATCATTGCCTGGTCTATACACCCCAAGACTCTCTTAAAGACCCACATGGCCACGCCTGCTGCAGGAAATATTCTGACCTTAATGAACACTTTTGATCTGTCTGAAGCTAACATAACTGAACACACCTACAAAGATGTTCTTGGGCAACTGAACAGCACATTTCCAGCCGTCATTCAAAATCTTACTCTTAAAACCTGTGACCTCAATAGTTTTCTAAGTGAAgGTGTGGAAGGAACTGGCCTTGCATTCATCGTCTTCACTGAAGCAATTATGAAGATGCCAGTGTCCCCATTGTGGTCCATTTTGTTCTTTATCATGCTGTTCTGTCTCGGTCTGTCGTCTATGTTTGGCAATATTGAAGGAGTCCTTGTGCCTCTTCAGGACTTAAAGGTTTTTCCCAAATCATGGCCCAAGGAGCTCATAACTGgCACCATATGTCTTGTGTCTCTTCTGATCGCCTTGATATTTGTTCAGCAATCTGGGAATTATTGGCTGGCACTATTTGACAACTTTGCTGGTTCCATTCCTCTGCTGATCATTGCTTTCTGTGAAATGGTTGGAGTGGTATACATTTATGGAATAGAC
>TU111045
AGATTACACATCTCTGATGGGATTCCTAAAACTTAACAATGAAGCATGAAACCTTGACATACTGTAGACAAAACTGAAGTAAACCTCAGTAAAGAAAAGTAAACCTACACAGAAAGCAAACACAATCATGGAaaacaggaaagagaaaaaaaaatcaatgcacaaCGAGAAGCTATTATGCAGCAAAATCCAGgatattgtaagttgcccttAGTTGTGGTGCTTggtaatgaattaataatacaactaataataataacaataactgtCTAAACAGCTCTAATATTAGTTCTCCAAGGAAACAACACATGACAATAACTCTGCATGTGTCTTGTAATTCCAGGGGCGTTCATGATTCCATTCCTAATCCTGCTAGTCCTCGAAGGAATCCCATTGCTGCACCTGGAGTTTGCAATTGGCCAAAGACTAAGGAAAGGCAGTGTTGGTGTGTGGAGCACCATTCACCCTTATCTTTTGGGAGTGGGTATAGCATCCATGTGTGTCTCTTTCCTGGTGGGTCTGTATTATAACACCATCATTGCCTGGGTGATGTGGTATTTCTTCAATTCCT

Function

symbol description
slc6a19b Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in floor plate; pronephric duct; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Hartnup disease and iminoglycinuria. Orthologous to human SLC6A19 (solute carrier family 6 member 19).

NR:

description
PREDICTED: sodium-dependent neutral amino acid transporter B(0)AT1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021868 True 776 mRNA 0.44 6 34378701 34387667
TU111045 False 571 lncRNA 0.39 2 34387254 34388010

Neighbor

gene id symbol gene type direction distance location
AMCG00021866 NA coding downstream 30668 34327158 ~ 34348033 (-)
AMCG00021863 LOC107751906 coding downstream 103990 34263815 ~ 34274711 (-)
AMCG00021865 NA coding downstream 118305 34251674 ~ 34260396 (-)
AMCG00021864 NA coding downstream 129054 34242865 ~ 34249647 (-)
AMCG00021860 LOC107748562 coding downstream 189175 34179592 ~ 34189526 (-)
AMCG00021870 NA coding upstream 357693 34745703 ~ 34757627 (-)
AMCG00021878 grina coding upstream 378842 34766852 ~ 34784712 (-)
AMCG00021879 NA coding upstream 402258 34790268 ~ 34809602 (-)
AMCG00021877 vps28,LOC107696523,LOC107592928 coding upstream 423146 34811156 ~ 34820379 (-)
AMCG00021885 kif13a coding upstream 923279 35311289 ~ 35351633 (-)
G89003 NA non-coding downstream 32712 34344635 ~ 34345989 (-)
G88991 NA non-coding downstream 92399 34284384 ~ 34286302 (-)
G88939 NA non-coding downstream 201220 34177047 ~ 34177481 (-)
G88918 NA non-coding downstream 397873 33976080 ~ 33980828 (-)
G88883 NA non-coding downstream 533249 33845114 ~ 33845452 (-)
G89011 NA non-coding upstream 31750 34419760 ~ 34420279 (-)
G89130 NA non-coding upstream 691563 35079573 ~ 35081173 (-)
G89212 NA non-coding upstream 982096 35370106 ~ 35370480 (-)
G89240 NA non-coding upstream 1017047 35405057 ~ 35405340 (-)
G89247 NA non-coding upstream 1066557 35454567 ~ 35455198 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other downstream 21794 34260004 ~ 34356907 (-)
AMCG00021849 NA other downstream 2309237 32063385 ~ 32069464 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other downstream 3246516 31129583 ~ 31132185 (-)
AMCG00021820 NA other downstream 3490113 30877848 ~ 30888588 (-)
G88527 NA other downstream 3954089 30337583 ~ 30424612 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other upstream 987006 35375016 ~ 35395771 (-)
G89368 NA other upstream 1555742 35943752 ~ 35946984 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other upstream 2026869 36414879 ~ 36438350 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other upstream 2136499 36524509 ~ 36537718 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other upstream 2289096 36677106 ~ 36687642 (-)

Expression


Co-expression Network