AMCG00021869


Basic Information

Item Value
gene id AMCG00021869
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34406849 ~ 34413209 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021869
ATGGCTTGTTAGTGGAATTATGTCCCTGACGAGAAGGAGAAAAATGAGCGGCAGTTCCAGCTGGACTTACAGTTCATCTGTGACAGGCTGCAGAAACTCCGCATTAGCGATGTGGTCCTGGCTAAGgCCATAAATACCCCTGCGCATCGCCTGGACCCCAGTCACCTGACAGGGATGAACTCTGTCCCTGACCTTACCCCCTCTCTTGCCAATCTTGGCATACAGCCCATGGGGGGACATGGCCCAGACTCTTTGTCCCCCCAGCCCTCAGCAGAGGGTCCCCAGTGCTCCCGTCAGGGCGAGAGGAAGGAGCCGCGAATCATCAAGGTGTCATTCACGGATGAGATTCAGCTCAACAAGGCAGAGAAGGCCTGGAAGCCTACAATAAATCAGGCTCCCACAGTGGGTGATGACCCCGAGGTCATTAAGACCCAGGAGCTGTTCCGCAGGGTGAGCGGTATTCTGAACAAGCTGACCCCACAGATGTTCCAGCCGTTGATGCATCAAGTGAACGAGCTGACCATTGACACGGAGCAGCGACTCCAGGGTGTCATGGAGCTCATCTTCGAGAAGGCCATCTCCGAACCCAACTTCTCCGCCTCATATGCCAATATGTGCCAGTGCCTTCTGAGGTTCAAAGTCCCGACCGCTGACAAGCCGGGAGTGACGGTGACTTTCCGCACTCTGCTTCTGAACCATTGCCTGAAGGAgtttaagaagaagaaacagaagatgCTGGATGCATCCTTGGTGGGCGAGGAGCGTCAGCGTCTACGTGATGAGCTGCAGGAGGCCAAGCGCAAGGCCCAGTGGCGCTCGCTAGGCCACATAAAGTTTGTTGGGGAGCTGTTCAAGCCCCACATGGACCGGTACTTCAGCCTGATGATGCATGTCGTCAAAAAGAGGAAGACCTCCTCTCGAATCCGCTTCATGCTGCAGGACGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCAGGAGGGGTGAGCAGGGTCCTAAGACAATCGACCAGGTCCACAAGGAAGCAGAACTGGAGGCGCACCGTGAGCGGATCAAGGTACAGCAGCAATGCATGATCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021869 True 1080 mRNA 0.55 8 34406849 34413209

Neighbor

gene id symbol gene type direction distance location
AMCG00021862 NA coding upstream 82927 34304949 ~ 34323922 (+)
AMCG00021859 clptm1l coding upstream 120530 34274666 ~ 34286319 (+)
AMCG00021858 NA coding upstream 584763 33810474 ~ 33822086 (+)
AMCG00021855 csmd3,LOC106570400 coding upstream 820349 33548596 ~ 33586500 (+)
AMCG00021856 csmd3 coding upstream 868939 33475168 ~ 33537910 (+)
AMCG00021876 fhod3,LOC108413044,LOC102209662,LOC102799816 coding downstream 183707 34596916 ~ 34607621 (+)
AMCG00021873 fhod3 coding downstream 211839 34625048 ~ 34678756 (+)
AMCG00021875 NA coding downstream 271806 34685015 ~ 34690667 (+)
AMCG00021874 rprd1a coding downstream 286639 34699848 ~ 34716167 (+)
AMCG00021872 NA coding downstream 305457 34718666 ~ 34736343 (+)
G89006 NA non-coding upstream 19177 34387254 ~ 34387672 (+)
G88981 slc6a19b,LOC106570715,LOC107596751,LOC107743232,LOC107685553,LOC107662664 non-coding upstream 20647 34383959 ~ 34386202 (+)
G88980 NA non-coding upstream 33184 34369970 ~ 34373665 (+)
G88938 NA non-coding upstream 229371 34176954 ~ 34177478 (+)
G88937 NA non-coding upstream 230143 34176389 ~ 34176706 (+)
G89010 NA non-coding downstream 6582 34419791 ~ 34420057 (+)
G89222 NA non-coding downstream 993501 35406710 ~ 35406984 (+)
G89280 NA non-coding downstream 1447707 35860916 ~ 36195602 (+)
G89283 NA non-coding downstream 1478954 35892163 ~ 35893862 (+)
G89285 NA non-coding downstream 1487434 35900643 ~ 35901176 (+)
AMCG00021802 kdm1b other upstream 3937929 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 3999077 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 5021524 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 5131502 29264827 ~ 29275347 (+)
G88276 NA other upstream 5341510 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 513344 34926553 ~ 35077090 (+)
G89142 NA other downstream 797924 35211133 ~ 35263537 (+)
G89299 NA other downstream 1551362 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 2237023 36650232 ~ 36659244 (+)
G89578 NA other downstream 3708048 38121257 ~ 38151049 (+)

Expression


Co-expression Network