AMCG00021875


Basic Information

Item Value
gene id AMCG00021875
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34685015 ~ 34690667 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021875
tgtttggCTGAACCTGGGCTCTTAAAGGGAGTGTGTGCGCAGAGGCTGCGTGTTGTAAGTTTGTCGTTGGTAGTTGAACGTCTGCTGCCGCTTTAATAGTCTTACAGCTGCTGCGCTTCGGCTTGTGTTTGTACGAAGTTCCCGGCCTCGACAATGGCAAAAGACATGTTTTTGTACTGGGGCTCGGGCTCTCCTCCTTGTTGGAGGGTCATGATTGCACTAGAAGAAAAGCATTTGCAGGGCTACCAGCACGAAATGCTCTCTTTCGAGAAACAGGAGCACAAGTCAAAGGAGGTGCTGGAGATCAATCCCAGAGGACAGCTTCCTAGCTTCAAGCACGGCAACATTATACTCAACGAGTCCTATGGCGCTTGCATGTTCTTGGAGAACCAGTTCAAGTCCCAGGGCACTGTGCTCATCCCTGAGGGGGCTGGGGAGCAGGCACTTGTTTACCAGAGGATGTTTGAGAATTTGACTCTGCAGCAGAAAATGGCTGATGTCATTTACTACACATGGCGCATCCCTGAGGCTGAGCGCCATGAGTCCGCACTGAAGAGACACAAAGAGGCTCTTGCTACGGAGTTCCAACTCTGGGAAGAATACTTTCAGAAGATGGATGCAGGGTCGTATGTGTCTGGAAAAAACTTCACCATGGCTGATGTGATGGTGTTCCCACAGATCGCTTTTGCCTTTCGCATTGGGCTTTCCCAGGAGAAGTACCCCAAACTGACCGACTACTATAACCTGCTAAAAGATCGTCCCAGTGTCCAGGCTTCCTGGCCCCCTCACTGGAAGGAGAATCCTCAAGGAATGGATACTCTGAAGGAGTTGTAACGCCACAGGTTTCACCTTGTAGCATTTGTGAAGATTTGTCATTCTCAGTTTTCCATAGCTACTGATCACGAACATGGGGAAAGCTGTGTAACCACTCTTTAAGAAAGCACTTTTGACAGTTTTGTATTGGCTTGAAGCTATATGTCTCGGTTTTCCCCTCTTGATATTTGTTGTGTAATCTTAAATCTGACAATCCCGGAAATGTGGACACTATTCACTagagcagtttgttttgttggtttataTGCTGCAGACCATAATTAAGTCATAGTTCAAGCTTGTTAAGGTGTTTTGGGTAAAATTGCCTTGGTActaaaatctttaaattattgcattttggCTGCTTCTGTGCAAATTGAGCGCATATATCAAGAGAACAGCTATGCAATGGCAGTCTCTTTCCTCACTGTAATTTGCTCAATAGCAAGTGCTTAGAGCAGTAAGTGGATAAAATAACTTGCCTTTTGATGTGGCTTTTGTATGGATTTACTTGTTTGTATATCAAAACTCAAAGattcacaacttattaataaaGTGACCATCACATTCTATTCAAATCTGATTTGGTTTTAATCAGAGTTGAATTTAATTCAGCATAGTTCCTGTCTTTATACACCCAACTCCTTCCTACCTACAATCTCTGGTCACTCCTTATATCCTCTCAGCATCTTCTACAGGATTTAGTCCTGCCTTCCCCCCCCAGTGTGGGACTGCTTTGGTACACTTCCTATAACCTTGCAATTATGGAATGAGTTGTTCATTAACTTAAGGAGGCAAGACTGTGCACTTCTAAAGACCTGTTTAGATAACATCACCATCCTTATCTTGTGTACCTTTTTTTactaatttgtaaattaatcttCTAGTAAAGTTACCCTTGAAATGTGTACGTAGAACATTGTATGTTTGTGATTAACCATGTATTTcatcctgtttaaaaaaaaaaaaaaaacagctaaataACATTGAAATGAAGAGCATATGAATCACTGAAAGCTTAAACTATAACCTCACAATAACCAGGTTTTCTCAGATGCCTGGAAAGGAAATTATCAAACCAAACCATTGTagatacatttctgttatttgATTTTTCCTTGAGAACCCCCTTATCACGGTCTATGGGATTCACTTACTACTGCAGTTCAgctacaaacttaaaaaaatacccCCTTCCAAATAAACAACCTAGTGGTTACCATCAAAAAAACCGCTGTTTATGCCTTTAGCCAATGAGCTGGTCCCAAACCAGAATTCCCTTTTTAGTGTGATGGTATATTCATAagcatattaaatgtaatgctgaTAATAAACtaagtaaacatttaaatacagccTCTTCAGAACAGGCTAGGTTTCACATCCTGTGGCAATAACATTCCATAATAAAGCACTGTTTTTTGAGGGATTTGACAATGAAACATGTATAATCTTTCTGCAAACTTAATATTgtgattaaatttaaaatatacattgatcagccataacattatgaccactgacaggtgaagtgaataacact

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004364 glutathione transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021875 True 2356 mRNA 0.41 6 34685015 34690667

Neighbor

gene id symbol gene type direction distance location
AMCG00021873 fhod3 coding upstream 6259 34625048 ~ 34678756 (+)
AMCG00021876 fhod3,LOC108413044,LOC102209662,LOC102799816 coding upstream 77394 34596916 ~ 34607621 (+)
AMCG00021869 NA coding upstream 271806 34406849 ~ 34413209 (+)
AMCG00021862 NA coding upstream 361093 34304949 ~ 34323922 (+)
AMCG00021859 clptm1l coding upstream 398696 34274666 ~ 34286319 (+)
AMCG00021874 rprd1a coding downstream 9181 34699848 ~ 34716167 (+)
AMCG00021872 NA coding downstream 27999 34718666 ~ 34736343 (+)
AMCG00021871 NA coding downstream 129673 34820340 ~ 34824676 (+)
AMCG00021883 NA coding downstream 290910 34981577 ~ 34983088 (+)
AMCG00021882 NA coding downstream 386434 35077101 ~ 35086504 (+)
G89010 NA non-coding upstream 264958 34419791 ~ 34420057 (+)
G89006 NA non-coding upstream 297343 34387254 ~ 34387672 (+)
G88981 slc6a19b,LOC106570715,LOC107596751,LOC107743232,LOC107685553,LOC107662664 non-coding upstream 298813 34383959 ~ 34386202 (+)
G88980 NA non-coding upstream 311350 34369970 ~ 34373665 (+)
G88938 NA non-coding upstream 507537 34176954 ~ 34177478 (+)
G89222 NA non-coding downstream 716043 35406710 ~ 35406984 (+)
G89280 NA non-coding downstream 1170249 35860916 ~ 36195602 (+)
G89283 NA non-coding downstream 1201496 35892163 ~ 35893862 (+)
G89285 NA non-coding downstream 1209976 35900643 ~ 35901176 (+)
G89298 NA non-coding downstream 1273091 35963758 ~ 35970466 (+)
AMCG00021802 kdm1b other upstream 4216095 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 4277243 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 5299690 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 5409668 29264827 ~ 29275347 (+)
G88276 NA other upstream 5619676 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 235886 34926553 ~ 35077090 (+)
G89142 NA other downstream 520466 35211133 ~ 35263537 (+)
G89299 NA other downstream 1273904 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 1959565 36650232 ~ 36659244 (+)
G89578 NA other downstream 3430590 38121257 ~ 38151049 (+)

Expression


Co-expression Network