AMCG00021888


Basic Information

Item Value
gene id AMCG00021888
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35727419 ~ 35740510 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021888
TGTGTAGATAATCGGTGTGACATTTGTTTCCCACTTTGTTACACATTTAGTAGCAGTGTCTATAGATCCTGCAGATTCAAGCGTCCGTGCCAGGAAGAACTACAGCAATCCCATGCCAGTCCTAGACAAGAGAACGCATCCCCACGCCCAAAAGTGAAACACTGCAGCAGCTGCAATAAGTGCATCTATGATTTTGATCACCACTGCAACTGGCTGAACAACTGTGTAGGAGGAAGGAACTACTGgtttttcttgGTTACTGTGGTGTCTGCAGTCCTTGGAATTCTGCTGTTTGTATTTGTCATCCTCTTTATATTCATCGAGCATTTTGTGAACCCTGCTACATTACGTTCAGCTCCACAGTTTAATGTGGCTAAAAAGATGAGTACTTATGAATACATACTGaaacagctacacacacagagCATCAGAGACCAAGATAAGGAAACTACTCAATCAACACCTACCAGTGGTACATCCTTGCAGAATTTGCCAGCAGTGGAACCTATCATTGACTGTGATGCACCATTATCTGGAAGGGCC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021888 True 543 mRNA 0.44 5 35727419 35740510

Neighbor

gene id symbol gene type direction distance location
AMCG00021889 NA coding downstream 54896 35668304 ~ 35672523 (-)
AMCG00021885 kif13a coding downstream 375786 35311289 ~ 35351633 (-)
AMCG00021877 vps28,LOC107696523,LOC107592928 coding downstream 907040 34811156 ~ 34820379 (-)
AMCG00021879 NA coding downstream 917817 34790268 ~ 34809602 (-)
AMCG00021878 grina coding downstream 942707 34766852 ~ 34784712 (-)
AMCG00021890 NA coding upstream 57680 35798190 ~ 35799107 (-)
AMCG00021887 trip13,LOC106596102,LOC106590995 coding upstream 188081 35928591 ~ 35950291 (-)
AMCG00021891 NA coding upstream 286770 36027280 ~ 36030435 (-)
AMCG00021892 plekhg4b,LOC107729807 coding upstream 314464 36054974 ~ 36058550 (-)
AMCG00021898 NA coding upstream 882021 36622531 ~ 36625236 (-)
G89264 NA non-coding downstream 15703 35711463 ~ 35711716 (-)
G89247 NA non-coding downstream 272221 35454567 ~ 35455198 (-)
G89240 NA non-coding downstream 322079 35405057 ~ 35405340 (-)
G89212 NA non-coding downstream 356939 35370106 ~ 35370480 (-)
G89130 NA non-coding downstream 646246 35079573 ~ 35081173 (-)
G89272 LOC101154678 non-coding upstream 76856 35817366 ~ 35817621 (-)
G89359 NA non-coding upstream 111526 35852036 ~ 35893714 (-)
G89373 NA non-coding upstream 226609 35967119 ~ 35985261 (-)
G89428 NA non-coding upstream 757684 36498194 ~ 36501828 (-)
G89431 NA non-coding upstream 771089 36511599 ~ 36511931 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other downstream 331648 35375016 ~ 35395771 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other downstream 1339409 34378701 ~ 34388010 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other downstream 1347124 34346988 ~ 34380295 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other downstream 1370512 34260004 ~ 34356907 (-)
AMCG00021849 NA other downstream 3657955 32063385 ~ 32069464 (-)
G89368 NA other upstream 203242 35943752 ~ 35946984 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other upstream 674369 36414879 ~ 36438350 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other upstream 783999 36524509 ~ 36537718 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other upstream 936596 36677106 ~ 36687642 (-)
G89598 NA other upstream 2520877 38261387 ~ 38283855 (-)

Expression


Co-expression Network