AMCG00021891


Basic Information

Item Value
gene id AMCG00021891
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 36027280 ~ 36030435 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021891
AGTCACCCTTCTTTGACCAACCTGTGTTTTAGTTGAGAGCTATACCCCCAAGTTACAGACTAGTCAAGCATAAGTTTTCAGGGACAATGAAGTCTTTAAAATTTCTTGCAGCAGAGTGTTTTGTCCAGGACAGCCAGAATGCCAAGGAGAATCTAAACTGTGTATCTCACAATCTATATACTTTACTGTTTAAAGCTAGTTATTTGCAAGAGAAGGCTGAAGTGATTCATGATCTTGTTCAGAACTGGCCTTTGACAGAGTTAAACCTGGAAAGCATCTTGGGGAAAACAGCAGATTACAAGGAGGATTTGACCAGGTGGACTTGTCGCAGCTGTCTGGAAGCTTGCCTGAATGGCTTGAAAGATTATGTTCTCTGCAGCTCTGCCACTTATGCAAAGACTCTCAAATGGGTGGACCTCACTGGATTACAGGATGTAGAATACCAGCTTTGTAAGTGCAAACAAACTTTGGGGAAATGGGCTAGAACTGAGATGGTGGCAAGAATCTGTTATGATTTACTCATGGCAATGCAATCTGAGAAGGCAGATGCATCAGTGTTTGACATTTCCATTAACATTGTGATGAACATTTTTGTGACCAGTCGCAGTTATGAGATTGTGGTGCAGGCCCTATTGCTGAAGTCTCACTgtcctttgaaaataaaatgcctggGCTTCAGGGCAGACTGCCTAACTGTGAAAAAACTTTTCTACATCATTAAACTTGTAGAGCCCCTTGCTTTGCAGAAGCTAGAGATTGTTCACAATGTCAATTTGGAAACAATGCACCTGGAGGTCCTTCTCTCACATGTTTCATTTCCTGAGCTGAGATCACTGACTCTTCCAGCCAAGACATTTGATGTACGCAGGATGGCTCCTGAAGATGAGGCTGTTTTAGCACAGATTGGGGATCTACTTAGCCACCTTAATCATCTCACTGAACTGCGAGTGGCTTTTTCAACCCTCACGGGGCGTATTCGCAAATTGCTTAGCCCAATGACCACACCACTACAGTCACTTGAGATTGCAAACTGTGCACTGAACCATGCAGACATGGCCTATCTGGCCAACAGTCTCCATGCTGAGCACCTTGAAAGCCTGGACCTCAGTGGTCACAACGTGGCAGATCTCTTCCCTTCCACTTTCTTTAAACTCCTAAATCGGGCCTCTCACACACTGAAGAGCCTCACTCTGGAGGAGTGCAACATAGAGGACAACCATGTAAACATGATGATACTGGGTCTTGTACCATGCAGGAAGTTGAAGGAATTCAAGTTTTTAGGCAACCCCCTGAGCTCTCAAGCTCTCAAATGTCTCTTTGAGGTGTTCTGTACCTTTCCTCACCTGAAGTACATTGAGTTCCCGGTACCTCGAGACTGCTACCCTGACAATGTTGCCTATCCACTGGATGAGGCCACACTGGTCAACTATGACAAGAGGCAGTATGAAGAAATCAGAACAGAGctattgttcattttgttccAATCAAACCGTGAGGATATTGTAGCAACTACACCTCTTTTCGGGACTTACGATCCAGACATTCATGAGACTAGCAATGAGCTGGGAGTTTTCATGCTGCAGTCCTTTAGAAATGTCCTAACCAACTTTATAGATAGCATTTCAACATCATCCGAGGACTAAAAAGTAAGGCCCAGATGTACAAGTGggaaaattacattacaatgagaaattactgaaaatgtttatttgaattaaaggAATTTTGATGATTGTTAATGTGGTCAAACCATGTACACATTTTGACatgctgtgtaaaaaaaaaaacactatgtTATAAACATATTAGGTTTATTGTGTGGCCTACTTAAGTATAGTATGACAGTAATTTAGTAATGATAATTTAtaatcagaaaatgaaaaaatacacttaCTTTACATGATTATCAAATTTAGCTTAATCAATGTCCAGAGAGCAAAAAAACTGTAGTAAAgctgtactgtacactgtaaactGTAGTAAAGGGTGTGAATGTTGATTCAGACAGTGACAAGattatgttatattaaaaagtatGTTAAAAAGTAGGTataaaatttacatttacaattgaCATAAGCACATAACATAGTAATATAGGACAGTAAGCATGAGAACCTAATGCAAAGACAAATATCACATTACTGCTTACCACAGTAAGTGACTTAACTGGCATAATATACGAGGAGtgcaattcaattcaatatagCTGCAATgttcacacaaaatatatattcaatttgaaataagttaatgtgcattaaaatatatgaaccagttcattttaaataaaagtgtgcatgtgaaataaattacattatgaGGCTTTCTCTTTGTTTGTAAGTAAATATTGGATTCTATTTTCAAGAGGATGAATGTGGGCAgacagtttaataataatacatttatattgtaaacACCCAAATTAAAATTTCCctatgatatatataataaaattaattattttcttgtaatgtccaactatacactcacctaaaggattattaggaacacctgttcaatttctcatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021891 True 2531 mRNA 0.38 2 36027280 36030435

Neighbor

gene id symbol gene type direction distance location
AMCG00021887 trip13,LOC106596102,LOC106590995 coding downstream 76989 35928591 ~ 35950291 (-)
AMCG00021890 NA coding downstream 228173 35798190 ~ 35799107 (-)
AMCG00021888 NA coding downstream 286770 35727419 ~ 35740510 (-)
AMCG00021889 NA coding downstream 354757 35668304 ~ 35672523 (-)
AMCG00021885 kif13a coding downstream 675647 35311289 ~ 35351633 (-)
AMCG00021892 plekhg4b,LOC107729807 coding upstream 24539 36054974 ~ 36058550 (-)
AMCG00021898 NA coding upstream 592096 36622531 ~ 36625236 (-)
AMCG00021902 LOC108435486,LOC106605067 coding upstream 805993 36836428 ~ 36845633 (-)
AMCG00021901 NA coding upstream 837408 36867843 ~ 36874210 (-)
AMCG00021903 atp9b coding upstream 913598 36944033 ~ 36975116 (-)
G89373 NA non-coding downstream 42019 35967119 ~ 35985261 (-)
G89359 NA non-coding downstream 133566 35852036 ~ 35893714 (-)
G89272 LOC101154678 non-coding downstream 209659 35817366 ~ 35817621 (-)
G89264 NA non-coding downstream 315564 35711463 ~ 35711716 (-)
G89247 NA non-coding downstream 572082 35454567 ~ 35455198 (-)
G89428 NA non-coding upstream 467759 36498194 ~ 36501828 (-)
G89431 NA non-coding upstream 481164 36511599 ~ 36511931 (-)
G89539 NA non-coding upstream 1228108 37258543 ~ 37258818 (-)
G89549 NA non-coding upstream 1436346 37466781 ~ 37467591 (-)
G89553 NA non-coding upstream 1534539 37564974 ~ 37565215 (-)
G89368 NA other downstream 80296 35943752 ~ 35946984 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other downstream 631509 35375016 ~ 35395771 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other downstream 1639270 34378701 ~ 34388010 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other downstream 1646985 34346988 ~ 34380295 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other downstream 1670373 34260004 ~ 34356907 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other upstream 384444 36414879 ~ 36438350 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other upstream 494074 36524509 ~ 36537718 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other upstream 646671 36677106 ~ 36687642 (-)
G89598 NA other upstream 2230952 38261387 ~ 38283855 (-)
G89611 NA other upstream 2365136 38395571 ~ 38397755 (-)

Expression


Co-expression Network