AMCG00021892 (plekhg4b,LOC107729807)


Basic Information

Item Value
gene id AMCG00021892
gene name plekhg4b,LOC107729807
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 36054974 ~ 36058550 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021892
AGCAAGCAGGTCGAGCTGGGTGACAAGATGGACCTTGCCTCCTACCTGCTGAAACCTATCCAGAGAATGAGTAAATATGCCCTACTCCTTAAAGACATGATCAAGGACTGCAGCAAGTCCCAGGAGCAAGAACTTACTGACTTGCAGGCTGCAGAGGAGATGGTTAAGTTCCAACTTCGCCATGGCAATGACCTCCTGGCCATGGATGCCATTCGAGGCTGTGATGTGAATTTAAAGGAACAGGGGCAGCTGAGATGCCAGGATGAGTTTATAGTTTGGTGTGGACGCAGGAAGTACCTGAGGCATGTCTTCCTTTTTGAAGACCTAATTTTGTTCAGCAAAACTAAAAAGGTCGATGGAGGCTATGATATCTACATCTACAAACAATCGTATAAGaCAGCAGAAATTGGAATGACTGAAAATGTGGGTGACAGTGGCCTGCGGTTTGAAATTTGGTTTCGGCGCAGGAAGTCTCAGGATACCTTCATTCTACAAGCCAGCTCAGTGGAGGTGAAAGCTGTGTGGACAAATATAATAGGAAAAATACTTGATGCAGCTATAAGTGACAGAGCAATAGATTATATCATGAAGAGGACAGcATCCAGAACTCGAGCTTCTATAGCAGTCTCTTCATTTGACCACTCCACACCTTTTAAAAGGCCACATTCCACCATTTCCAATAGCAGCACATCTTCCTCCAGCAGTCAGTCCTCTTCCTCCATTCTGGGATCACTAAATTTGCACCTGTATCCTTCATCTTATGCAGTGTCCAACTGTCCAACTTTCAATCACTGGTCTTTTGACATTGGAACATGCATTGAAGAAGATGAGCTGGAGGAGGAAACGGGC

Function

symbol description
plekhg4b Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of small GTPase mediated signal transduction. Predicted to be located in cytosol.

NR:

description
pleckstrin homology domain-containing family G member 4B isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021892 True 849 mRNA 0.45 5 36054974 36058550

Neighbor

gene id symbol gene type direction distance location
AMCG00021891 NA coding downstream 24539 36027280 ~ 36030435 (-)
AMCG00021887 trip13,LOC106596102,LOC106590995 coding downstream 104683 35928591 ~ 35950291 (-)
AMCG00021890 NA coding downstream 255867 35798190 ~ 35799107 (-)
AMCG00021888 NA coding downstream 314464 35727419 ~ 35740510 (-)
AMCG00021889 NA coding downstream 382451 35668304 ~ 35672523 (-)
AMCG00021898 NA coding upstream 563981 36622531 ~ 36625236 (-)
AMCG00021902 LOC108435486,LOC106605067 coding upstream 777878 36836428 ~ 36845633 (-)
AMCG00021901 NA coding upstream 809293 36867843 ~ 36874210 (-)
AMCG00021903 atp9b coding upstream 885483 36944033 ~ 36975116 (-)
AMCG00021904 NA coding upstream 934301 36992851 ~ 36999640 (-)
G89373 NA non-coding downstream 69713 35967119 ~ 35985261 (-)
G89359 NA non-coding downstream 161260 35852036 ~ 35893714 (-)
G89272 LOC101154678 non-coding downstream 237353 35817366 ~ 35817621 (-)
G89264 NA non-coding downstream 343258 35711463 ~ 35711716 (-)
G89247 NA non-coding downstream 599776 35454567 ~ 35455198 (-)
G89428 NA non-coding upstream 439644 36498194 ~ 36501828 (-)
G89431 NA non-coding upstream 453049 36511599 ~ 36511931 (-)
G89539 NA non-coding upstream 1199993 37258543 ~ 37258818 (-)
G89549 NA non-coding upstream 1408231 37466781 ~ 37467591 (-)
G89553 NA non-coding upstream 1506424 37564974 ~ 37565215 (-)
G89368 NA other downstream 107990 35943752 ~ 35946984 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other downstream 659203 35375016 ~ 35395771 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other downstream 1666964 34378701 ~ 34388010 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other downstream 1674679 34346988 ~ 34380295 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other downstream 1698067 34260004 ~ 34356907 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other upstream 356329 36414879 ~ 36438350 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other upstream 465959 36524509 ~ 36537718 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other upstream 618556 36677106 ~ 36687642 (-)
G89598 NA other upstream 2202837 38261387 ~ 38283855 (-)
G89611 NA other upstream 2337021 38395571 ~ 38397755 (-)

Expression


Co-expression Network