AMCG00021897 (smim13,si:dkey-206d17.5,LOC107559689,LOC107551766)


Basic Information

Item Value
gene id AMCG00021897
gene name smim13,si:dkey-206d17.5,LOC107559689,LOC107551766
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 36677106 ~ 36687642 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021897
GCACTGTATGGCCAAGCGCATTGTATACTGTGTACAATGTGCGCttacttgttttaattgtttttgtttttacgtatatatttatttgttgttttttctcatgaAATGTTTGTCTGTACTCCGTTTTTCTGGTAGTGTTAGAACAgcagtttgtatttttagaGTGTCTCCGCAGTAACTTGGGATCTGTTGTGAATGGTTTTGTGTTTCAGCGAAATGATCGGTAGGGTTTTATACCGAAACTAATTTCTTGAATCTCAGTAACTACCTCTTGGACTTTTAGTTCAACATCATAAATGGGCCTACAgctcaaaacataaaaaaggaaagggtTATACAGTGCTTGCGCTTGGGATAAAATGTGGCAAAGCGTCGGTCTGACAGTGTTGGTCATTATAGCCACCCTGGTGTGCGTGTTGCTATTCATGCTGTTCGGGTGGTATGTGGTGTGGCAGCTATTCTTGTCCAAGTTTAAGTTTCTCCGAGAGCTGGTGGGAGACACTGGATCCCAACAGGGAGACAACGAGCTGTCCGAATCTGAGGCAGAGGGCGATTCGCCCCCAACCCCACGTCACAGACCCAAGACTGCAAGGCAGAGGAAAGCCCCAGTAGAGGAAGCCACATAGGGGGCAAGGCGGCCTGAGACTCTGAACACAACATTCTAGAAGCTAGATATGAACATGACATGGAACATTTGTTAAGGTAGAATTTTAGCATCACCTTTCCAGGCACTGGAATATGTAGGGCATGTTCTCTAATCCCCAGAGTTTCTGTAGCTATCCAGTAGTGTGCTGCTACCTGTGAGATGAGTTACTGTCCATCATGTCATGCTGATATCTGTGTTTCCAGAGCTAAGCTTTGTTTGTGGAATATAAACAACTAATAATCAAGATCATAAAATGGCGTTCAGTATTTAGTCCATGGCAAATCATATTCTAACCAAACTCCCCAGGCTAATGCggtttctcctttttttattaactgtgATATTCCAAATGTTACTCAAATGtgcaatgtaaaatgtaatgcagtgtTTTGCCATTCATAAGTGAGAAACATTTAAGAttgttgaccttgattttgccTTTAGGTCTTGTTAAGGAATGAATGTTGTATCATGACCTCACACTAAAACCAAGATGCACCTCAGGTCATTACAGTTTACTTTTGCATGGCATGAGGTGtgctgctttaattaaaatttaaaagcaaCTGAAGTACAGTtattaaatagattttgaacccagtttgaaaaatgttttgcacatttatgttgtttgtttccCGTTTCTGTTCCCTGTTTGTAGGTGATTTTATATGTaatgctgattttgtttgtttctgtagatGGTCTTTGATCATAGCAAAAACTGTAAACTGTTaggttatgtattattttgcaataattaattgccatcaataaatgtatttcttaaaagatgcattttctttttatcggaatgaaaatataaaagctCCTCTTTATAAGTTCATAACCAAACAAACTTAATAGCTGAGCTATATAATAAACCTAAGGTCTAATACTTTATCCCATTGAAGGTCAAAAGAGCAGTATTTTATAACACAATCTGATTTAAACACAGCATGCCTAAAGGATGGGTGCATTCTTGTAGAAcctattattgctattattatgattgtaatCGCCATCAAGCTATGTGCTAGTAGGTATACCTTCCTGTAACTGATTGTGGAGATAGTTTGTGGCTTTTAAACTGTGCAACTTGACTCTCTTAACTAATTATGTTTACTCCAGATTTATATATAACTGCCAACAACACTCCTTGccgtattattatttacttagcAGTTTCAAGAATAATCATATATTAAAAGCAGGTACAATATAGtaggttataatttaacaaatccatacacatttcagtcatggcataTATACATGTGAAAATGTGGCGGGAAGCAGGGGCGCCATGGCCCCCCCTGAATTAAGCCTGCCCCCTCCCCAGCGGTCCCCCCTAAGATTGCTGTCTGTGCCCCCCCTAGCATGAACAGAACACCCATTACCCCCCCGCTTGTGTGAACCCCTCCCAGTTGAAGCAGAATGGAAAAAATGCAGTaagcaaaacataaatgtcaaacaaaacaaattgcaaagcaaatataaataaataaactcaggACTCTCTGTAACCACaactaaattatattgttatattggtGCTGGCAGACTAAATCCTCCCTACTCaaaccaaataaatgaaaataaactcaattTAACCCTACAAATGAACTtagtgttctttaaaaaaaaagaaatcccaaACAGTAGAAGACTATTACATTCCACTGATAACTCAGGTTTCAACTAATTCATTACCAATATGCTCCCCATTGGTAAAACTTGCACTCACCTGCcccttaaaaaacaatataattggaGGTGCACATACCTTTAATTTTAACCAAAATagctaaataaaatgaaaacaaaataaaacatccatcTGCATGGTGTTATTCATACAGCATTTAACAACATCTTACTTAAACagtaacacaaattaaacaaagtaacTAGTGGTGGTTATAAAAGATGGTTATAATGTGATTTCTCCTCATTACACAgttgttaatgttttcatttattcattcatttatttatcttgtaaatgggcTCATGTTAACTAAAtcatgttcgccttcatactgatgtTCTCTGCGGAGCTGTTGCACAGCAGACTCTGCACATCATTCACattgttcagttgttttttggCTGTTGCTGCTCTGATTATTGTCCTTCATGTTTTTACtctatccatttttttttaattgcaccaGAGTCCTGTTTAATCTGAGTTCGGCAAGACCTCTGGCATACACTCAGATATTTCTAACTGTAATcaataattgtttctgtatgtcgactgctaataaaactttaatttcttcctga
>TU111619
GTTGAGCACTGTATGGCCAAGCGCATTGTATACTGTGTACAATGTGCGCttacttgttttaattgtttttgtttttacgtatatatttatttgttgttttttctcatgaAATGTTTGTCTGTACTCCGTTTTTCTGGTAGTGTTAGAACAgcagtttgtatttttagaGTGTCTCCGCAGTAACTTGGGATCTGTTGTGAATGGTTTTGTGTTTCAGCGAAATGATCGGTAGGGTTTTATACCGAAACTAATTTCTTGAATCTCAGTAACTACCTCTTGGACTTTTAGTTCAACATCATAAATGGGCCTACAgctcaaaacataaaaaaggaaagggtTATACAGTGCTTGCGCTTGGGATAAAATGTGGCAAAGCGTCGGTCTGACAGTGTTGGTCATTATAGCCACCCTGGTGTGCGTGTTGCTATTCATGCTGTTCGGGTGGTATGTGGTGTGGCAGCTATTCTTGTCCAAGTTTAAGTTTCTCCGAGAGCTGGTGGGAGACACTGGATCCCAACAGGGAGACAACGAGCTGTCCGAATCTGAGGCAGAGGGCGATTCGCCCCCAACCCCACGTCACAGACCCAAGACTGCAAGGCAGAGGAAAGCCCCAGTAGAGGAAGCCACATAGGGGGCAAGGCGGCCTGAGACTCTGAACACAACATTCTAGAAGCTAGATATGAACATGACATGGAACATTTGTTAAGGTAGAATTTTAGCATCACCTTTCCAGGCACTGGAATATGTAGGGCATGTTCTCTAATCCCCAGAGTTTCTGTAGCTATCCAGTAGTGTGCTGCTACCTGTGAGATGAGTTACTGTCCATCATGTCATGCTGATATCTGTGTTTCCAGAGCTAAGCTTTGTTTGTGGAATATAAACAACTAATAATCAAGATCATAAAATGGCGTTCAGTATTTAGTCCATGGCAAATCATATTCTAACCAAACTCCCCAGGCTAATGCggtttctcctttttttattaactgtgATATTCCAAATGTTACTCAAATGtgcaatgtaaaatgtaatgcagtgtTTTGCCATTCATAAGTGAGAAACATTTAAGAttgttgaccttgattttgccTTTAGGTCTTGTTAAGGAATGAATGTTGTATCATGACCTCACACTAAAACCAAGATGCACCTCAGGTCATTACAGTTTACTTTTGCATGGCATGAGGTGtgctgctttaattaaaatttaaaagcaaCTGAAGTACAGTtattaaatagattttgaacccagtttgaaaaatgttttgcacatttatgttgtttgtttccCGTTTCTGTTCCCTGTTTGTAGGTGATTTTATATGTaatgctgattttgtttgtttctgtagatGGTCTTTGATCATAGCAAAAACTGTAAACTGTTaggttatgtattattttgcaataattaattgccatcaataaatgtatttcttaaaagatgcattttctttttatcggaatgaaaatataaaagctCCTCTTTATAAGTTCATAACCAAACAAACTTAATAGCTGA

Function

symbol description
smim13 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM13 (small integral membrane protein 13).

NR:

description
PREDICTED: small integral membrane protein 13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021897 True 2938 mRNA 0.37 2 36677106 36687637
TU111619 False 1522 TUCP 0.39 2 36678527 36687642

Neighbor

gene id symbol gene type direction distance location
AMCG00021898 NA coding downstream 51870 36622531 ~ 36625236 (-)
AMCG00021892 plekhg4b,LOC107729807 coding downstream 618556 36054974 ~ 36058550 (-)
AMCG00021891 NA coding downstream 646671 36027280 ~ 36030435 (-)
AMCG00021887 trip13,LOC106596102,LOC106590995 coding downstream 726815 35928591 ~ 35950291 (-)
AMCG00021890 NA coding downstream 877999 35798190 ~ 35799107 (-)
AMCG00021902 LOC108435486,LOC106605067 coding upstream 148786 36836428 ~ 36845633 (-)
AMCG00021901 NA coding upstream 180201 36867843 ~ 36874210 (-)
AMCG00021903 atp9b coding upstream 256391 36944033 ~ 36975116 (-)
AMCG00021904 NA coding upstream 305209 36992851 ~ 36999640 (-)
AMCG00021905 NA coding upstream 403556 37091198 ~ 37171379 (-)
G89431 NA non-coding downstream 165175 36511599 ~ 36511931 (-)
G89428 NA non-coding downstream 175278 36498194 ~ 36501828 (-)
G89373 NA non-coding downstream 691845 35967119 ~ 35985261 (-)
G89359 NA non-coding downstream 783392 35852036 ~ 35893714 (-)
G89272 LOC101154678 non-coding downstream 859485 35817366 ~ 35817621 (-)
G89539 NA non-coding upstream 570901 37258543 ~ 37258818 (-)
G89549 NA non-coding upstream 779139 37466781 ~ 37467591 (-)
G89553 NA non-coding upstream 877332 37564974 ~ 37565215 (-)
G89559 NA non-coding upstream 926755 37614397 ~ 37614596 (-)
G89562 NA non-coding upstream 1073175 37760817 ~ 37761021 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other downstream 139388 36524509 ~ 36537718 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other downstream 238756 36414879 ~ 36438350 (-)
G89368 NA other downstream 730122 35943752 ~ 35946984 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other downstream 1281335 35375016 ~ 35395771 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other downstream 2289096 34378701 ~ 34388010 (-)
G89598 NA other upstream 1573745 38261387 ~ 38283855 (-)
G89611 NA other upstream 1707929 38395571 ~ 38397755 (-)
AMCG00021918 cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275 other upstream 2568237 39255879 ~ 39276056 (-)
G89765 NA other upstream 2798191 39485833 ~ 39486288 (-)
AMCG00021924 eppk1,LOC106938278,LOC107592034 other upstream 2799255 39486897 ~ 39548802 (-)

Expression


Co-expression Network