AMCG00021901


Basic Information

Item Value
gene id AMCG00021901
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 36867843 ~ 36874210 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021901
aggcTTTCAGCTATACTCCAAATGTAAGCCTTTCACTTCCACTCAACATGGGAACCCCCTGCCTAGCAACCACACCTTACCACAGCCTCCAGTCTAGCCCAGTTATCTCTGTGTCTTCCAACCACCACCCTGGGTACAGCGGGCATGAGGACAATGGAGCCTCGGGTTATTATCTATCTCCAAATATGAGGCTGAACGGAGCCCCGGCATTGGAGAGCCCACGCATTGAAATCACAGCCTACACCGGTCTGCACCATGGTACTAGCCAGTTCCCAGAGGATGAGATTGAAGAGAACCTGCCTAGCACTAAAAGGGTGAACTCCATTGTCACTCTGACTCTGCCCAATGCTGACAACTACAGGGACCCTAGCTGCCTGAGCCCGGCCAGCAGCCTTTCCTCCCGTAGTTGCAACTCAGAGGCCTCATCCTATGAATCGGGATACTCTTACAACTATGACAACTCACCACAAAACTCGCCATGGCAGTCACCTTGTGTCTCCCCCAAGGGTGAGGTCTACCACCCCCAGGGGCTTGTTCCCTGTGCTCTTGTCAACTCACCTCGTCACTCACCCTCCAACTCTCCAAGGGCCAGCATCACCGAAGAGAACTGGATGGGTAATAGGAACTCCAGGCCTTCCTCCCCCTGCACTGGCAAGAGGAAGTACAGCTTCAATGGTGTTCCTTGCAGGCATCCATCATACTCCCCCAACCACTCCCCAACACCCTCACCTCAGACCTCCCCACGAGTCAGTGTGACAGATGAGACCTGGCTGCCCAACACCAACCAGTACACCAACTCGGCCATCGTTGCAGCTATTAATGCTCTTACCACAGATGGGGTTGCAGACCTCAGTGAAGGCATCCCCATCAAGTCCCGAAAAACTACCATTGACCACAGCCCCTCCATGAGCCTCAAAGTGGAGCCAGGTGGAGAGGAACTCCATGGCGAGCTCCCTCAAGAGGACTTTTCTAATTCTTGCTTGCccttcaaaaaagaaaatttCTGCGGGGACTTCTTAGTCGTGCCTCAGAACCCTTATACTTGGACCAGGCCAAAGCCATACATCAGCCCTTCACTGCCAGCCCTTGACTGGCAGCTACCATCCTGTTCAGGGCCTTACAGCCTGCAAATTGAGGTACAGCCCAAATCCCATCACCGCGCTCATTATGAGACGGAAGGAAGCAGAGGGGCGGTGAAGGCACTGGCAGGAGGACATCCCGTGGTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009612 response to mechanical stimulus biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021901 True 1226 mRNA 0.54 2 36867843 36874210

Neighbor

gene id symbol gene type direction distance location
AMCG00021902 LOC108435486,LOC106605067 coding downstream 22210 36836428 ~ 36845633 (-)
AMCG00021898 NA coding downstream 242607 36622531 ~ 36625236 (-)
AMCG00021892 plekhg4b,LOC107729807 coding downstream 809293 36054974 ~ 36058550 (-)
AMCG00021891 NA coding downstream 837408 36027280 ~ 36030435 (-)
AMCG00021887 trip13,LOC106596102,LOC106590995 coding downstream 917552 35928591 ~ 35950291 (-)
AMCG00021903 atp9b coding upstream 69823 36944033 ~ 36975116 (-)
AMCG00021904 NA coding upstream 118641 36992851 ~ 36999640 (-)
AMCG00021905 NA coding upstream 216988 37091198 ~ 37171379 (-)
AMCG00021906 sall3,LOC103388658,LOC102796582,LOC103369140 coding upstream 338406 37212616 ~ 37234841 (-)
AMCG00021907 galr1,LOC107373077,LOC102797365 coding upstream 1083545 37957755 ~ 37958533 (-)
G89431 NA non-coding downstream 355912 36511599 ~ 36511931 (-)
G89428 NA non-coding downstream 366015 36498194 ~ 36501828 (-)
G89373 NA non-coding downstream 882582 35967119 ~ 35985261 (-)
G89359 NA non-coding downstream 974129 35852036 ~ 35893714 (-)
G89272 LOC101154678 non-coding downstream 1050222 35817366 ~ 35817621 (-)
G89539 NA non-coding upstream 384333 37258543 ~ 37258818 (-)
G89549 NA non-coding upstream 592571 37466781 ~ 37467591 (-)
G89553 NA non-coding upstream 690764 37564974 ~ 37565215 (-)
G89559 NA non-coding upstream 740187 37614397 ~ 37614596 (-)
G89562 NA non-coding upstream 886607 37760817 ~ 37761021 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other downstream 180201 36677106 ~ 36687642 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other downstream 330125 36524509 ~ 36537718 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other downstream 429493 36414879 ~ 36438350 (-)
G89368 NA other downstream 920859 35943752 ~ 35946984 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other downstream 1472072 35375016 ~ 35395771 (-)
G89598 NA other upstream 1387177 38261387 ~ 38283855 (-)
G89611 NA other upstream 1521361 38395571 ~ 38397755 (-)
AMCG00021918 cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275 other upstream 2381669 39255879 ~ 39276056 (-)
G89765 NA other upstream 2611623 39485833 ~ 39486288 (-)
AMCG00021924 eppk1,LOC106938278,LOC107592034 other upstream 2612687 39486897 ~ 39548802 (-)

Expression


Co-expression Network