AMCG00021906 (sall3,LOC103388658,LOC102796582,LOC103369140)


Basic Information

Item Value
gene id AMCG00021906
gene name sall3,LOC103388658,LOC102796582,LOC103369140
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 37212616 ~ 37234841 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021906
ATGTCGCGCCGCAAGCAAGCAAAGCCACAGCATCTCAAGTCGGACGAGGAGCCAACACTAGCTGAGGTAGTTTCTGAAAATGcaACCCCAGGAGAAGGAGTGGATGATGCAGACAGTGGAAATGAGAGTCGCAGTGGAAGCGAAGAAACTCATGTGTGTGAAAAGTGCTGCGCCGAGTTCTTCAAGTGGACAGACTTCTTGGAACACCAGAAAAACTGTACCAAGAACCCCATGGTGCTGATTGTGAATGAGGACGAAGCAGCACCTGATTCCCAAGAATATCCTTCTGAGCCTTCCCCAGCACCAAGCTGCCCCAGTGACCCAGCTGACAGTGAGGACGCGGAAGAGAGCTGCACACCAACAGATGGAAATGAGAGCTCAGAGGTAGTAACTAGCACAGAGAAGGAGGACGAACCCATGGAGATGGAACAGTCTCCTGAAAAAGCAGCTGATCCTGAGCCAGTTCCATCAGAACCAGCTCTTTCTCTACCTCAGATTCCTAACCCATCTTCCATGACGAACTATAATATGCCAAACACTAATGTGACTTTGGAGACTTTGCATAGCACAAGGGTAGCGGTGGCACAGTTCTCACAGAGCCCCCGCTCAGGTGCAAATACAGGGGTGACCACCATGGCCATTCCCATGATTCTCGATCAGCTGATGGccctacagcagcagcagattcaTCAGTTGCAGCTAATCGAACAGATCCGAAGCCAGGTGGCAATGATGAACCGCCAACCGATGCAACCAACACTCAACCCTGCTGCTGCTTCCCAAGGTCCATCTTCAGTTACAGCCTCCAACCAGCTGCAGCTCCAGGGCTTCATTGTACCACCAGTTCATCAGCTACCAGCTACAGTGCCCTCTGCTGTAAATGGGCAGGCCTCTGGCGCACTGCCGTCCACCCTGGAGGGATCTCAGCAACATATATCCCAACCTGTCTGTGTGCCAGCCAATCCAGGACTACCCAGCAGCACTTCTGTCTCAGCTGAGTGCAACCTTCCCCCTTCCAGTTGCAATGTGGTCACATCTTTACTGCCTCCCTGCCCTATCACAAACACGAACAATAGCTGTACCCAGCCACGGAATGCTTCAACCCCTCCATCAATTGGACACGGAAGTCTCCTCAGCCCATCTTCCAACTTGCCACTACTACCTCAGAGTTCCTCAAGTAGTGTCATCTTCCCCAACCCCTTAGTTAGCATTGCTGCCACTGCAAACGCACTGGATCCACTGTCTGCGCTGATGAAGCACCGTAAAGGGAAGCCACCCAACGTGTCCGTCTTTGACACTAAACCCAGCTCAGAAGACCCCTTTTTTAAGCATAAATGTAGGTTCTGCGCCAAGGTGTTTGGGAGCGACAGTGCTCTGCAGATTCACCTGCGCTCTCATACTGGAGAGAGGCCCttcaaatgtaacatttgtgGAAACCGCTTTTCCACCAAGGGAAATCTGAAGGTTCATTTTCAAAGGCATAAAGAGAAGTATCCTCACATCCAGATGAACCCATACCCAGTACCAGAATACCTCGACAATGTGCCCACTAGCTCAGGCATCCCCTATGGAATGTCTTTGCCTCCTGAAAAGCCAGTGACAACATGGTTGGACAGTAAGCCTGTTTTACCTACGGTTTCCACCTCTGTGGGGCTCCAGCTTCCTCCTACTCTTCCTAGTATGGGTACCTACAATGATTCTCCAAGTATTACTCCTTTAAGCAGAGCCAAGCCCCCTCTTCGGGTTCAGCACTCGTGTCCCATCTGCCAGAAGAAATTTACTAACGCTGTTGTCTTGCAGCAACACATTCGTATGCACATGGGAGGGCAGATTCCCAACACACCTTTGCCAGAGGGCTTCCAGGACAGCATGGACACTGACCTCTCCTTCGATGAAAAGAGTATTGATGCCATGAGCAACTATGATGATGACCTTATGGATGAAAATTCCATGGAAGAAGAAGCAGAGATCAAGGAAGGTGAAAATGACCCTTCCAAACCCTTGATGTCCTATTCCAGCTTGTCCCCAAATTCACCACCTTCTGTAATATCCAGCATTGCCGCCCTGgaaaaccaaatgaaaatgaTCGACTCCACAATCAGCATGCAGCACTCTTTTGGACTGAAGTCAATTGAGAATGGGTGCATGGAGAGTGATCACTTGACAAATGACTCTTCCTCAGCTGTGGGGGACCTAGAGAGCCAGAGCGCAGGAAGCCCAGCGATGTCAGAATCATCCAACTCCATGCAGGCCCTGTCCCCTGCTCACAGCAACACAGAGAGCCATCGTTCCAAGTCTCCCAGCGCCAACAATCCAGAAGAGGCCCAAGATGCAGCAGCAACAGTAAAGTCTGAAAAGTCGGAAACTCCATCCCCTGCACTTGAAAATGGAGGCCCGCTTGATCTGACAGCCACCCAGACCCATCCTGGCAGACCCATCATCAAAGAGGAATCTCCTTTCAGCATGCTGTTCCTCAGCCGAGAACGTGGTCCGAGCCAAAGTACTACTAGCCTGGTTACCAGCACAGCACCCAGCATGATCAAAATTGAAGTGAACGGGCACAGCAAGCCGATGTCCATAAGCGATGGTCCACACCTCCCGGTTGGTATCCAGGTTCCTGCTGTGCCCCAGACGGCGATGAGTCCAGGTATTACCCCCATGCTGGCACCGCCACCACCTCGCCGGACGCCCAAGCAACACAACTGCCACTCCTGTGGAAAGAACTTCTCCTCAGCAAGCGCTCTGCAGATCCATGAACGCACTCACACGGGTGAAAAACCTTTTGGTTGCACAATCTGTGGTAGAGCTTTTACCACTAAAGGGAATCTGAAGGTTCACATGGGCACCCACATGTGGAACAATGCGCCCGCCAGACGGGGACGACGTCTTTCAGTAGAGAACCCCATGGCACTGTTGGGGGGCGATGCCATGAAGTTCACCGAGATGTTTCAGAAGGACCTAGCTGCCCGAGCTATGAATGTGGACCCCAGTTTCTGGAACCAATATGCTGCAGCCATCACCAATGGCCTGGCCATGAAGAACAATGAGATCTCGGTCATACAAAATGGGGGAATCCCTCAGCTCCCTGTCAGTCTAGGTGGGGGTGGTATCCCATCTTTAAACAGCTTGTCTAGTGGAATGGACAGGGCCCACACAGGAAACAGCCCACCCATGACTGGTTTAGAAAAGACAAGCATAGATGTCGGAGCAAATCGTGCATTTTCTAGGTTTCTTGAAGACAACAAAGAAATCGGTATCAACTGAAAGACTGCTCTTGATGCAAAAGCAACTGTTTGATCAGTTGGAACTATAACATTTATGTACTATATTATGTAcagattcattttttctttgtttttttctggcaACTGTAGTGTTAGAGATTGGTCTATCTTACCTTACTTTTTGATTTATTGCTACTTTACTCATACCAAGAATACATTGTTTCTTGATTGAGATACAGTAGTCTTGCAAAAATTGGCATGGTACATTTGGTTTCTATCAGTacatttgactgtttttggggaacaaaacattataaagaaaaaataacattttacagtgtTGAGCAAGCCTCTGATTTGATctgtcacactgacacacactggtTTACTCCTTGTGTGGGTATAAAGAGACTAGCCTTGATCTAGTGTTAGTCACTTTGCAGTTACTGTATGCTCTAAGTGAAAAGGGCCTTGAATTTATGAGATTAAAGTTAGTGCTCAcctaatattttttcttcacatgaAGTAAAAACTTGaacatgtttgaaatattttaatctgtACATTTAGTGCCCCAACATTGTCTTATATTAATGTCCAGTGTGTTTAGTATTTataatattggaaaaaaaatgcgggtaaaagaaaatatatttaatagccCCAATGTTTTATTGATCCTTTTTCTAAACTACAGactacaaatataaatgtttctttcaataaagacaaaaaagtcattttatctgaacaaaacaaaaaaacattgtttagttttatttgaaagtCTAGCATGATGATTTTGTGCCATTATGGTACATAGTAGAAATTGAGACTCCTTTAGCTGCTATTTTGAAAATTGTGCTATTACTAGACAACTTGTTCAGAAATTAAACTGTtgtctgaaagaaaaagaaaaaaattacagacaaatcttaaataaacaaatgtatgcatattttttatgaaatatagaGTTTAAACATAAAGTTGATTTTATAATTTGAGGGGAACTGTTATGGTTATGTGtctgcactttttaaaatacaaaggtTTGTCTGTAATTTATGTTATTCCTTGAGAGAACtacacaattttgttttaaattgcttcATAGTTTGTGCTTTTGGAAACAAAATCCATGCTTCACACCATCAAATTAATCTTCCAGATGCAGACTTTTATGTCACTCTGAATGTGACAGCTATACACCTCCTGGGGAGACATTTCTGTcctctacaaaacaaaaataaagagaaactaACATTTGACGTCTTTCGTAAATTTGTTCCTTTAGTTCAATGTAGGAGAAGAGTGTTGATATGCTGGAGCTTTGCTTTCCATACAAAAAAAGGGATGTTTTCTATTTACATAGATGTTGTTTATGacagaaatgcaaagaaaaacatttgccGTTAATCAATTTATGAATATAAGATTTCATTCCCTACTCattgctgctttttattttttaatattattatttgtattgctgtaaaGCACAGTGCTCTTTgatcataaaaaacaacatattaggTGTGgtggttgttttaaaataatcacaataatatgGATAGTTTTATCTCAAAGCTATGATGTGAGGTTGGGGTGTGAGgtttttttaaacttgaactaacagtgtatattttgtgtactacctcatttaattttaatttttaatttttatttttcatgaaagCATGGTGGAATTTAAAGATCATGGTAACTTCCTTTGTTACAAACTGTACAACTGAACCATGATATTGTGCAACATCAAAGAGTAGTTAAATGCTCCTTgtctctttaaaatgaaaaaaacaagaaagacacttttttccccctctggctgggacatgaaaatgtatttggtatGGAAGATTGTTCTTGCATATCTCACCATTTTACTGTAAGGGGCTGACTTGCTTCAGCCTTCATatgattaaatgaaaagcagatatagatatataaaaacaaaacgattGAAGACTTTTACAGCTGTATATTCTTACTGGGTGTAAAGGACTATAAACAGATTGTTTTCAGCAATTACCATGTGTCATCCTGGtgtatttacacacatttctgtttctttttggcACCACGTGTTGGAGAGATTTATAacttaatggacaaaaaatatCAAGGTGGCTTAATATTGCTCTATTTCAGCagctgaatgttttttaatttatttttttccttgtgtgtgtgttttatttgtttgtttttgttagttacTTGGTACCATGTAGTGTTAATCTCCTCTCctccagaataaaataaaaaagtgattaaGTTACTGTAAATAGGATGGTTGCTGAAGGTAAAGTCAAGACTGAACCCATTTTGTATTCGAGGAATTGGCTGTTCCTCTCTGCATGGTAAAGAAAGACACTATTTTTATACTGTGATACCATGTAGGGCTGGAAGACCACCTCGAACCAGCTGGGAATTGATACCTAGAtccaatattttttattagtataCCTTGTTGGCTTGACACATCTACTGATTGAAATGGATGTCTTAGTCTAGGTTACTATTTTTGtcatatggaaataaataaaatccaggatgtaataatacaacaaaGGGTTTGGAATTTTTCAGTAggtttgtttaatgaaaaagtataacaagaaaagtattttatttcaa

Function

symbol description
sall3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within limb morphogenesis; negative regulation of smoothened signaling pathway; and olfactory bulb interneuron development. Predicted to be active in nucleus.

NR:

description
PREDICTED: sal-like protein 3 isoform X1

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021906 True 5882 mRNA 0.42 5 37212616 37234841

Neighbor

gene id symbol gene type direction distance location
AMCG00021905 NA coding downstream 41237 37091198 ~ 37171379 (-)
AMCG00021904 NA coding downstream 212976 36992851 ~ 36999640 (-)
AMCG00021903 atp9b coding downstream 237500 36944033 ~ 36975116 (-)
AMCG00021901 NA coding downstream 338406 36867843 ~ 36874210 (-)
AMCG00021902 LOC108435486,LOC106605067 coding downstream 366983 36836428 ~ 36845633 (-)
AMCG00021907 galr1,LOC107373077,LOC102797365 coding upstream 722914 37957755 ~ 37958533 (-)
AMCG00021909 NA coding upstream 945239 38180080 ~ 38224604 (-)
AMCG00021908 NA coding upstream 1003297 38238138 ~ 38245037 (-)
AMCG00021913 tshz1,LOC107592027,LOC107748691,LOC107696938,LOC107593600 coding upstream 1584570 38819411 ~ 38826295 (-)
AMCG00021921 NA coding upstream 1703766 38938607 ~ 38945501 (-)
G89431 NA non-coding downstream 700685 36511599 ~ 36511931 (-)
G89428 NA non-coding downstream 710788 36498194 ~ 36501828 (-)
G89373 NA non-coding downstream 1227355 35967119 ~ 35985261 (-)
G89359 NA non-coding downstream 1318902 35852036 ~ 35893714 (-)
G89272 LOC101154678 non-coding downstream 1394995 35817366 ~ 35817621 (-)
G89539 NA non-coding upstream 23702 37258543 ~ 37258818 (-)
G89549 NA non-coding upstream 231940 37466781 ~ 37467591 (-)
G89553 NA non-coding upstream 330133 37564974 ~ 37565215 (-)
G89559 NA non-coding upstream 379556 37614397 ~ 37614596 (-)
G89562 NA non-coding upstream 525976 37760817 ~ 37761021 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other downstream 524974 36677106 ~ 36687642 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other downstream 674898 36524509 ~ 36537718 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other downstream 774266 36414879 ~ 36438350 (-)
G89368 NA other downstream 1265632 35943752 ~ 35946984 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other downstream 1816845 35375016 ~ 35395771 (-)
G89598 NA other upstream 1026546 38261387 ~ 38283855 (-)
G89611 NA other upstream 1160730 38395571 ~ 38397755 (-)
AMCG00021918 cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275 other upstream 2021038 39255879 ~ 39276056 (-)
G89765 NA other upstream 2250992 39485833 ~ 39486288 (-)
AMCG00021924 eppk1,LOC106938278,LOC107592034 other upstream 2252056 39486897 ~ 39548802 (-)

Expression


Co-expression Network