AMCG00021913 (tshz1,LOC107592027,LOC107748691,LOC107696938,LOC107593600)


Basic Information

Item Value
gene id AMCG00021913
gene name tshz1,LOC107592027,LOC107748691,LOC107696938,LOC107593600
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38819411 ~ 38826295 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021913
ATGCACAATTTCAAGCACTCCAGTGGTACACCATTCAGTGTAGCTAAAGCTTATGTGCCGGAGGAGGAGCTCAAGGCTGCAGAAATAGATGAAGAAAACCTACAGGATGATGGACTCTCTCTAGATGCCCAGGACAATGAGTTCCCCTgcaatgaggaggaggaggaaagcaAAGATGCCCCCAGCTATCAGAACTCCCCCCTTAGCACTGCGACTAATCAGGATGCGGGGTATGCATCTCCCCTCAGTGACACCAGTGATAGGCTGGCAGACTTCAAGAGCACTTCCTCGAAAGATGGCCATGAGAAAGAAGAGGCCACTGTGCAGCTTTACAGGCAGAACAGTAAACTGTACGGCTCTGTGTTTACCGGTGCAAGCAAGTTCCGGTGTAAGGACTGCAGTGCAGCGTATGATACACTTGTGGGTCTCACTGTACACATGAATGAGACGGGACACTATCGTGACGACAACAAAGACAAAGAGGAGGACAGCGGAAAGAAATGGTCAAAGCCCAGGAAACGCTCCTTGATGGAGATGGAAGGAAAGGAGGATGCACAGAAAGTGCTTAAGTGTATGTACTGTGGGCATTCCTTTGAGTCCTTGCAAGACCTGAGTGTCCACATgatcaaaacaaagcattacCAGAAAGTGCCTCTTAAAGAACCAGTGCCAGCCCTCACCTCTAAGCTGGTCCCCTCTACCAAAAAACGAGCACTTCAGGACTTGGTTTCCCCCTGCTCCCCAGAGTCTATAAGCAGCACGCCAGGTGTTCCAATGGGTGAGCCTACAAAAGACCAGAAAACAGCTAATCCTTATGTGACGCCAAACAATCGCTATGGCTATCAAAATGGTGCCAGCTACACTTGGCAGTTTGAGGCCCGCAAGGCCCAAATTCTGAAATGCATGGAGTGTGGGAGTTCACATGACACCCTTCAGCAGTTGACAGCTCACATGATGGTCACAGGACATTTTCTTAAAGTGACCAACTCTGCTTCGAAAAAGGGAAAGCAACTGGTCTTTGACCCAGTGGTGGAGGAAAAGATTCAGTCTATCCCTCTGCCTCCCACAACTACGAGGCTGCCCGTGCCGAATATCAAGTCACAGCCAGATTCCCCTGCCCATTCATCTGGTTCTGAGGAGAAGAGAGAGCTAGAAGAGGAGAAGATGGAAGTCATTGAACCACAGAAGAAAATcaaggaggagaaggaagagcCAGGAGAGAAGACCGAGACTAACATGCCGTATAAATATCTCAGAGAGGAGGATTTAGAAGAGACTCCAAAAGGAGGGATAGATATTCTGAAATCCTTGGAAAACACAGTGTCCAGTGCAATCAGCAAGGCCCAAAATGGCACCCCTACCTGGGGGGGTTACCCCAGCATTCATGCCGCTTACCAGCTCCAGGGGTCTGCAAAATCTGCACTGTCCAATGTGCAGAGTGTTCAAGTGCAGCCTTCTTATAACAACAACATGAAAGCGATGTCATGTGACCAGGCATCTGCATTGATCCACTCCCCTGGGAGCACATCACCTCCCATCCACAAAAGCAATGTCTCTGCCATGGAGGAGCTGGTTGAAAAGGTTACGGGGAAAATATCAGCAAAGAAAGAGGAGAAACTTTTGGAAAAAGGGAAGCCTGTCTTGATCAAAGCCCCTTCTCCCCCTGCAGTAGAGAATAAAGACTCGCCTAAGCCAGACGACCTGAGCAGCAAGCCAGTGATGAAGAACAATATTGTGGAGGCAGAGCCTGCAAAGATGCAAAAAGAGAGTTCAGCAGATAATCACATCAAAAATGATGCCGACGGAAGCGCGTTCGAGGACGCCTTAGAGGAGTTGTCTCCAGTTCAGAAACGGAAGGGCCGGCAGTCTAACTGGAATCCCCAGCATCTCCTAATTCTCCAGGCACAGTTCGCCTCCAGTCTGAGGGAAACCCCAGAGGGGAAGTACATTATGACTGACCTGGGCCCACAAGAGCGGGTCCACATTTGCAAATTCACTGGTCTTTCCATGACCACCATAAGCCATTGGCTGGCCAACGTTAAGTATCAGTTGAGGCGGACAGGTGGAACGAAGTTCCTAAAGAATATAGATTCTGGTCAACCAGTGTTCCTTTGCAATGACTGTGCCTCTCAGTTCAGGACTCCCTCCACTTACATAAACCACTTAGAGTCGCATTTAGGCTTCAGCTTGAAGGACCTGTCAAAGTTGTCAATAGATCACATACGGGAGCAGCAGGCTGTTTCAAAGGTGATATCCGATAAGACATTTGGCTCACTCGGGCTCTCCGAGGATGACTCTGGATCCATATTCCAGTGTAAGCTGTGCAACCGAACTTTCGCCAGCAAACATGCAGTAAAACTGCACCTTAGCAAAACACATGGCAAGTCACCAGAGGACCATTTGGTGTATGTCACTGAACTAGAAAAGCTAGAGAAACAGTAG

Function

symbol description
tshz1 Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of gene expression. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; head; hindbrain neural plate; neural tube; and pectoral fin bud. Orthologous to human TSHZ1 (teashirt zinc finger homeobox 1).

NR:

description
teashirt homolog 1 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021913 True 2442 mRNA 0.49 4 38819411 38826295

Neighbor

gene id symbol gene type direction distance location
AMCG00021908 NA coding downstream 574374 38238138 ~ 38245037 (-)
AMCG00021909 NA coding downstream 594807 38180080 ~ 38224604 (-)
AMCG00021907 galr1,LOC107373077,LOC102797365 coding downstream 860878 37957755 ~ 37958533 (-)
AMCG00021906 sall3,LOC103388658,LOC102796582,LOC103369140 coding downstream 1584570 37212616 ~ 37234841 (-)
AMCG00021905 NA coding downstream 1648032 37091198 ~ 37171379 (-)
AMCG00021921 NA coding upstream 112312 38938607 ~ 38945501 (-)
AMCG00021920 znf407,LOC106583495,LOC106605077 coding upstream 218490 39044785 ~ 39052673 (-)
AMCG00021919 NA coding upstream 364603 39190898 ~ 39192682 (-)
AMCG00021917 NA coding upstream 382720 39209015 ~ 39234436 (-)
AMCG00021916 NA coding upstream 456975 39283270 ~ 39285802 (-)
G89631 NA non-coding downstream 2261 38816944 ~ 38817150 (-)
G89630 NA non-coding downstream 175373 38643828 ~ 38644038 (-)
G89625 NA non-coding downstream 327826 38491335 ~ 38491585 (-)
G89618 NA non-coding downstream 393971 38422700 ~ 38425440 (-)
G89617 NA non-coding downstream 396735 38421733 ~ 38422676 (-)
G89657 NA non-coding upstream 113267 38939562 ~ 38939824 (-)
G89716 NA non-coding upstream 507630 39333925 ~ 39334125 (-)
G89723 NA non-coding upstream 557354 39383649 ~ 39385676 (-)
G89724 NA non-coding upstream 559523 39385818 ~ 39386082 (-)
G89748 NA non-coding upstream 636180 39462475 ~ 39462921 (-)
G89611 NA other downstream 421656 38395571 ~ 38397755 (-)
G89598 NA other downstream 535556 38261387 ~ 38283855 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other downstream 2131769 36677106 ~ 36687642 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other downstream 2281693 36524509 ~ 36537718 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other downstream 2381061 36414879 ~ 36438350 (-)
AMCG00021918 cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275 other upstream 429584 39255879 ~ 39276056 (-)
G89765 NA other upstream 659538 39485833 ~ 39486288 (-)
AMCG00021924 eppk1,LOC106938278,LOC107592034 other upstream 660602 39486897 ~ 39548802 (-)

Expression


Co-expression Network