AMCG00021917


Basic Information

Item Value
gene id AMCG00021917
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39209015 ~ 39234436 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021917
ATGGACCCTTCAGATGTGGAGAAACAGGTGATTGACTATTTAAGTGCTTTGTTTGCTAAACGCAATAGTCCAAATAAGCTGAAAGTGCAAATGGTCATTGGAGCCAAACCTTGGGTGGCTGACATCAATGACCCGCCGTATGAAGCGGGGAAAAAAGCTGTCAAGAAAGTGTTCGGAGAGGATCCTCATATGATCCGAGAGGGAGGAACGATCCCTGTAGCGAAAACATTTGAAGACCTACCCaatggcaaaataattcctcttCTGAAAGTTGTCACAGCTCAGTTtgggaatgaccccaagaagcGGACAGTCTGTGTTTATGGCCATGTTGATGTCCAGCCTGCTAAAAAGGAGGATGGGTGGGCAACAGAGCCTTACAACCTGACTGATATTAATGAAGCTGACTTCAGCAACTTCTCTGAAAAGACATTACACGATCTTCATTATTCTCTTTACAAAAATAGCAAGGAAAAGACTGCTGGACACAGAGCTGAATACAGCGGAACTATGGTGAAGCTCCTTGTTTCCGtaattatgttatatatgtCCTCTGAAGTGACAATGTCACCTTTGGACGATTTATTCCAGTACATAGATGGACACCAAGATGACTTTGTACAGACCTTGAAGCAGTGGGTGGGTATCAAGAGCGATTCCAGTGATCCCAGGACCTGGAATGAAGTGGAGAGGATATTAAATGTGACAGCAGTGAAGATCAGAGATCTAGGAGGAATTGTAGAGTTTGCTGATGTGGGAAAACAGCAGATGCCCAATGGAGAATCCATTCCCACACCACCAGTAATCTTAGCAGAATTCAAGAAGGACCCAAAAAAACCTACTCTCTGTATTTATGGACATGTTGATGTGCAGCCAGCTGAGAAGAAGGATGGCTGGGCAACAGATCCATACACTCTAACCGAAGTTAATGGTAACTTATATGGACGAGGAGCAACAGATAACAAAGGACCTGTTCTTGCTTGGATTCATGCAGTGGAAACCTATCAAGCCATGaaaaagGAAATTCCAGTCAATTTGAAGTTTATCATTGAAGGGATGGAAGAGGTGGGATCGACTGGCTTGGAGACATTGGTTAAGCAACGAAATGACAGCTTTTTTGCTGATGTGAACTATATAGTTATCTCAGACAATGTTTGGGTAAGCAAGAAACCTGCTCTCACTTATGGAACCAGAGGAAACACCTACTTCCTTGTTGAGGTTGAAGGACAGAAGCAAGATATGCACTCTGGAGTCTTTGGGGGTTCCGTTCATGAACCATTGATTAATTTGATAGCTTTGCTTGGCAGTCTTGTAGACAGCAAGGGTACAATCCTGATCCCTGGCATAAATGAGGCTGTGGCCCCTCTAACAGAAGAGGAGAGGAAACTGTATGAGGGTATTGATTTTGACCTGGAAGAACACAAAAATGACACTGGCGTGACACGCTTCCTCCATGACACCAAGgaGGATATACTCATGTCTCGCTGGCGCTATCCAGCCCTCTCTATACATGGAATTGAGGGTGCTTTTTCTGCTCCTGGCACAAAGACTGTTATCCCCAGAAAAGTTACTGGGAAATTCTCTATCCGCCAAGTACCTAATATGGACCCTCCTGTGGTGGAGAGGCAGGTCACAGAACACCTTCAGGAAATCTTTGCAAAGCAAAACAGCCCTAACAAGCTGAAAGTGACAATGGTTGTTGATGCAAAACCTTGGATGGCTGATTTGAAGGACCCTCAATATGTTGCAGTGTTTGGAGTGGAGCCAGACCTAATTAGAGAAGGCTCCACAATACCAATTGCTAGAAACTTCCAGGAAATCACAGGGAAGAGTGTCATGATGCTGCCCATTGGAGGCGCTGATGATGGAGAGCACTCTCAGAATGAGAAGATCAGCAGATCCAACTACATACAGGGGACAAAACTTTTTGCTGCCTATGTGTATGAACTGTCTCAGGTTTAATAAGACTGACTTTGCATTTGAAGAACCAcatgtctttccctgtgtgtctgtgaataaggtcactgtctcatggtcttactgtgctactgtactgtgctatatagttcaaccctgatacctagaagaacagggtctgacaAGAACCAATTTTCTCCAGggatttgggcttgatacacaTTACGCATGCCTTCATTTCACCCTGGTTTAGCTAGATATGGGGCTTCCTTAGCAGTTGTCAGGCGAAAATCGAGCTTCCACTCATCAGAGGACAGACATGTGAGcttgttatctttctctcctgtctggtgtGCATAAAAGTGCTTGTAGTTTGTAACTTTTCTAAGACTTTTCAGGAGATTGCCTGTCGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K05604 CNDP1; beta-Ala-His dipeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021917 True 2330 mRNA 0.44 16 39209015 39234436

Neighbor

gene id symbol gene type direction distance location
AMCG00021919 NA coding downstream 16333 39190898 ~ 39192682 (-)
AMCG00021920 znf407,LOC106583495,LOC106605077 coding downstream 156342 39044785 ~ 39052673 (-)
AMCG00021921 NA coding downstream 263514 38938607 ~ 38945501 (-)
AMCG00021913 tshz1,LOC107592027,LOC107748691,LOC107696938,LOC107593600 coding downstream 382720 38819411 ~ 38826295 (-)
AMCG00021908 NA coding downstream 963978 38238138 ~ 38245037 (-)
AMCG00021916 NA coding upstream 48834 39283270 ~ 39285802 (-)
AMCG00021922 NA coding upstream 137370 39371806 ~ 39373457 (-)
AMCG00021926 NA coding upstream 185821 39420257 ~ 39423376 (-)
AMCG00021923 NA coding upstream 210052 39444488 ~ 39448728 (-)
AMCG00021925 NA coding upstream 241540 39475976 ~ 39479016 (-)
G89657 NA non-coding downstream 269191 38939562 ~ 38939824 (-)
G89631 NA non-coding downstream 391865 38816944 ~ 38817150 (-)
G89630 NA non-coding downstream 564977 38643828 ~ 38644038 (-)
G89625 NA non-coding downstream 717430 38491335 ~ 38491585 (-)
G89618 NA non-coding downstream 783575 38422700 ~ 38425440 (-)
G89716 NA non-coding upstream 99489 39333925 ~ 39334125 (-)
G89723 NA non-coding upstream 149213 39383649 ~ 39385676 (-)
G89724 NA non-coding upstream 151382 39385818 ~ 39386082 (-)
G89748 NA non-coding upstream 228039 39462475 ~ 39462921 (-)
G89749 NA non-coding upstream 229996 39464432 ~ 39465633 (-)
G89611 NA other downstream 811260 38395571 ~ 38397755 (-)
G89598 NA other downstream 925160 38261387 ~ 38283855 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other downstream 2521373 36677106 ~ 36687642 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other downstream 2671297 36524509 ~ 36537718 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other downstream 2770665 36414879 ~ 36438350 (-)
AMCG00021918 cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275 other upstream 21443 39255879 ~ 39276056 (-)
G89765 NA other upstream 251397 39485833 ~ 39486288 (-)
AMCG00021924 eppk1,LOC106938278,LOC107592034 other upstream 252461 39486897 ~ 39548802 (-)

Expression


Co-expression Network