AMCG00021920 (znf407,LOC106583495,LOC106605077)


Basic Information

Item Value
gene id AMCG00021920
gene name znf407,LOC106583495,LOC106605077
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39044785 ~ 39052673 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021920
GGCAACTGGACTGTAACAGAATTTTTCAAACCCTTTGGGCCCAACCGCAAAGCAGAGAATAAATGGCTGAAGTGCCAGGCCTCGACAGAAAAATCAATGCCTGGTTATACAGACATGACAGACCCAAGCCTTGCAATTCACTGCTCACCAAAGTCTGTGCAACTCACCGCTCTGCAGTGTTCTGAGAAGTGGGTAACCTTCACCTTTTCCcccttctttttctcttttttcctttctttcttacttATTTTCTCCCCTCTCCTTCTTGGTCTTTACAGAAAATTTGAATGTGAGCTCTGTGACCGGTCTTTCAGTGAGAAGTGGGCGCTGAACAATCACATGAAGCTGCACACAGGAGAGAAGCCCTACAAATGCGCCTGGCACACTTGCCACTATTCCTTCCTGACCTTGTCGGCGATGAAAGACCATTACAGGACCCACACAGGAGAGAAGTCGTTCCTCTGTGACCTTTGTGGGTTCGCTGGTGGGACACGTCATGCCCTGACCAAACACAGACGCCAGCAC

Function

symbol description
znf407 Predicted to enable metal ion binding activity. Orthologous to human ZNF407 (zinc finger protein 407).

NR:

description
zinc finger protein 407

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021920 True 525 mRNA 0.49 3 39044785 39052673

Neighbor

gene id symbol gene type direction distance location
AMCG00021921 NA coding downstream 99284 38938607 ~ 38945501 (-)
AMCG00021913 tshz1,LOC107592027,LOC107748691,LOC107696938,LOC107593600 coding downstream 218490 38819411 ~ 38826295 (-)
AMCG00021908 NA coding downstream 799748 38238138 ~ 38245037 (-)
AMCG00021909 NA coding downstream 820181 38180080 ~ 38224604 (-)
AMCG00021907 galr1,LOC107373077,LOC102797365 coding downstream 1086252 37957755 ~ 37958533 (-)
AMCG00021919 NA coding upstream 138225 39190898 ~ 39192682 (-)
AMCG00021917 NA coding upstream 156342 39209015 ~ 39234436 (-)
AMCG00021916 NA coding upstream 230597 39283270 ~ 39285802 (-)
AMCG00021922 NA coding upstream 319133 39371806 ~ 39373457 (-)
AMCG00021926 NA coding upstream 367584 39420257 ~ 39423376 (-)
G89657 NA non-coding downstream 104961 38939562 ~ 38939824 (-)
G89631 NA non-coding downstream 227635 38816944 ~ 38817150 (-)
G89630 NA non-coding downstream 400747 38643828 ~ 38644038 (-)
G89625 NA non-coding downstream 553200 38491335 ~ 38491585 (-)
G89618 NA non-coding downstream 619345 38422700 ~ 38425440 (-)
G89716 NA non-coding upstream 281252 39333925 ~ 39334125 (-)
G89723 NA non-coding upstream 330976 39383649 ~ 39385676 (-)
G89724 NA non-coding upstream 333145 39385818 ~ 39386082 (-)
G89748 NA non-coding upstream 409802 39462475 ~ 39462921 (-)
G89749 NA non-coding upstream 411759 39464432 ~ 39465633 (-)
G89611 NA other downstream 647030 38395571 ~ 38397755 (-)
G89598 NA other downstream 760930 38261387 ~ 38283855 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other downstream 2357143 36677106 ~ 36687642 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other downstream 2507067 36524509 ~ 36537718 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other downstream 2606435 36414879 ~ 36438350 (-)
AMCG00021918 cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275 other upstream 203206 39255879 ~ 39276056 (-)
G89765 NA other upstream 433160 39485833 ~ 39486288 (-)
AMCG00021924 eppk1,LOC106938278,LOC107592034 other upstream 434224 39486897 ~ 39548802 (-)

Expression


Co-expression Network