Gene
RNA
| Item | Value |
|---|---|
| gene id | G83342 |
| gene name | zc3h12b |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030130.1 |
| NCBI id | CM030130.1 |
| chromosome length | 39556810 |
| location | 2079669 ~ 2080014 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| zc3h12b | Predicted to enable endoribonuclease activity and mRNA binding activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic. Predicted to be active in cytoplasmic ribonucleoprotein granule and nucleus. Is expressed in optic vesicle; presumptive neural retina; and retina. Orthologous to human ZC3H12B (zinc finger CCCH-type containing 12B). |
| description |
|---|
| PREDICTED: probable ribonuclease ZC3H12B |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU103996 | True | 346 | lncRNA | 0.53 | 1 | 2079669 | 2080014 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00021072 | zc4h2,LOC107557113,LOC107597258,LOC107663226,LOC107672730 | coding | downstream | 22284 | 2049196 ~ 2057385 (-) |
| AMCG00021068 | NA | coding | downstream | 105561 | 1973785 ~ 1974108 (-) |
| AMCG00021069 | NA | coding | downstream | 106132 | 1969250 ~ 1973537 (-) |
| AMCG00021065 | LOC106603315 | coding | downstream | 126793 | 1931558 ~ 1952876 (-) |
| AMCG00021067 | NA | coding | downstream | 151811 | 1926713 ~ 1927858 (-) |
| AMCG00021075 | NA | coding | upstream | 6612 | 2086626 ~ 2106886 (-) |
| AMCG00021078 | NA | coding | upstream | 77635 | 2157649 ~ 2176534 (-) |
| AMCG00021077 | NA | coding | upstream | 150494 | 2230508 ~ 2245691 (-) |
| AMCG00021082 | NA | coding | upstream | 322160 | 2402174 ~ 2412334 (-) |
| AMCG00021085 | NA | coding | upstream | 442846 | 2522860 ~ 2576954 (-) |
| G83294 | NA | non-coding | downstream | 214442 | 1854882 ~ 1865227 (-) |
| G83205 | NA | non-coding | downstream | 1153105 | 922859 ~ 926564 (-) |
| G83091 | NA | non-coding | downstream | 1994542 | 84874 ~ 85127 (-) |
| G83081 | NA | non-coding | downstream | 2042778 | 36247 ~ 36891 (-) |
| G83343 | NA | non-coding | upstream | 3163 | 2083177 ~ 2086079 (-) |
| G83346 | NA | non-coding | upstream | 25050 | 2105064 ~ 2106398 (-) |
| G83352 | msn,LOC106567791,LOC102776036 | non-coding | upstream | 60276 | 2140290 ~ 2141743 (-) |
| G83355 | NA | non-coding | upstream | 64390 | 2144404 ~ 2147117 (-) |
| G83371 | NA | non-coding | upstream | 110612 | 2190626 ~ 2190909 (-) |
| G83313 | NA | other | downstream | 101701 | 1973160 ~ 1977968 (-) |
| G83428 | NA | other | upstream | 376987 | 2457001 ~ 2459379 (-) |
| AMCG00021090 | NA | other | upstream | 597571 | 2677585 ~ 2718919 (-) |
| G83761 | NA | other | upstream | 2623241 | 4703255 ~ 4751235 (-) |
| G83864 | NA | other | upstream | 4464478 | 6544492 ~ 6546577 (-) |
| AMCG00021153 | NA | other | upstream | 5035406 | 7115420 ~ 7122491 (-) |
