G83343


Basic Information

Item Value
gene id G83343
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2083177 ~ 2086079 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU103997
TCCTCGGCCAGAAAAACAGTTAAGTCACAGCACACCGTACAGCATGTCTCGTACATTCAGTAACGGCACAACCCGTGTGTGAAGGTCGCACTGTTACAGCTCGTCAATATCAGACTTCATTCCCCCCGCTCCCTCGTCAACACTGGAAAGGAAGAGATCTCTCACAACAAATCGTTTAAATTAACACTAAAACAAATCGTGCATGCATGTTTGTCAATAACTTAAAATGCagattcaaataaaaacctctGACCTCTGATCACATTGACCTCCACAGcacttttcttgtgttttgttcagaaaaGTGCCaataaatatagaatataaTAAGAGTACCCTCATTTTGGACACAAGATCCAAGGTTGTGTTTTGTAGAGATGATTTACTTCACAGTCTTCACACTGACAGGGTGTCACTCAATGAAGACACTGTAACTCGGGGGTATTAAGGGGCTGTTTCATCACCTGTCTGAACACATTACCTGGACCACCGTGAAGCAGAACTGAGTCGAACCCGTAACTGCGCTTCATGTCTTCGGTTAAACAGTCTGCCTGATGTATTTATGTCAATTCTAGGAGTCCTAAAACACAGGAAGTTGAGCCCAACTCCATTTTGGGTAGAAAATGGCTCGCATGCATGAACCCCCCATGTCTAATGTATTAAGGTACAGCTCAATTGGACAAAACTTAAGTCTAAACCCGTCCCTCTCAGAGCCCAGAGGCTGTAGACATCTCTGCACGGATATGATCCCGTGTCCTTTGTTTCACCCAATTTGCTGGCGCTCGAGTGTTATTTCATGTAAACGGTGTGTCAATCGGCGATAACGGTTTCACAAATAATACCATTTCCCTGTGAGAATACTTATTTCtactttagatcagtgcttctcATGCAATACTACTGGAAACAACTAAACCCCTAGCTTTAGATCAACTGAAGATGGACAGTAACTATTGTTCATCTGTCCGAACTGGATGGGGCAGCCTGAAACGTGCTGGCTGTATAAAACATGCGTGTGCTTTCGTGTTCCCCGTGTGTGTGTAGTGATATGCTGTGTCCAGTGGTTTGGTGGTGAAGTGAGCACAGTCCCAGTTCAGACCCTGACGGTGAGACGGGTCTGATGCGATATGAACCTCTGCAGCCAGTTCTCCCCTGACTGCGACACAAAACACGGCGAGGATTGTCTGAAGAGATTCTTCACCTCAAAACACACGTATTTGCATGTTGATGGTTCAGTTAGTGCCAACACCACTCCTCACACATTACAATTACTGTACAAACATCACATTTTGgctttatttaaagaaacagacGCACTTTGTCATTGAgacttacattttgtttgagCCGACAGACTCAAAGAgtttataaagttttttttttttttgttgtttacttttttaaaacaatttaaaagcaaCATGTTTCATtcaacaaagaataaaacaaactactGCAGATCATTACAACACAAGGACTAAAAATAGTCAACTCACTCAGATTACCCTTAACATTGCATAATAACCACAATACTAGTAGACATTTAACAAAACTGTTATGACACGTAAGAGATCTTCACTCAGGGACGTCTGAGCGGGGACTGCAGATCCAGAATAGCAAAAGCGTTTTGAATGCAGTTGGTGCAGCTTGCTCTATTTCACAAATCTCATAAATTACCTGAGAGTTGCTCTACTAGACGTACGTCTTGAAACAAGAGTACACAGATTCTGAAGCGTGAAGGTTGAGCTTTTAAGAGGACAAGCTGGATACTAAGTAGACTGACCTGTAGGTTAAACAGTGCaggttatatataaaatagtatttacaATATTTCAGAGATCTCTTTCAATCAAATCTAGGTAAAGACTGAAAAAATAGTATAGCTTTAGGACATGCCCTTAATATTGAATAAGAACCGCTTCATGTAAAAGGAGTTGAGTCCAATTAAAAGAGataccatttaattaaaatcccaaCTGCATATACTGAAAATATCTGCAGAGTCCCTCTGGTCATTAACACAAATGACAGAGAGAGGCCTGCACATCAGAGGACATCAACAGAGCAGTGATTCCTACCTGGCAAACCTCAACACAGAAATCAAATCCAAAAGCGTCTCTTTTTTAATGCTTAAGGCAAGGCTTTGTGCCAGAGAGTTGAGTGGCAAAACCGCAATCTACCCATTTCAAAAACTGGTGTGTCTTGGGGGAACAACAGTATATGATGGAGTGGTAATCCAAACTGTACTGCAGTTTAACGCCTCATGGCTGCGATTTTGTGTAAAGTGTGATCTTTTGAATCGCTTGTGATCGCTCTCTTACAGAAAATGAGCTGAGGACAGATGTATTGACGAATCCTGCCCATCCTGCTTGGTTACCACACTCCTATCATGTGGATACAGTTACTCCAGCAACACACACGGTATTAACACTTTACAGCTGTTTGATCCGTCCATGTTTAATCAGATATACAGAGAACATGATAATGCTAAAGAGCTGTACACACATCTGTGCACGGTCAGGTAGCACATTAAAAAGACTTTCGGTCTATAAACTACAGTGCCCAGTAAGAAATAGTACATACCCATGGGCTACTCCCAGTGACACACAGTGTCACAAACATTGTGGCATTTTTATAAAGCTATTCTATAGATGATACtgtacatttcataaatattttttacaatcaAGAAAGAGATACAATTTGTATCAACAAACAAAGGTCATTTCTGGGCATTTGAGGCATTGCTGTTTGCTGCGTTCAAAATAGCAATAGTTTGGAAAAGTGGAAACTAAAGCAAAAGTCTTTGACGACGTCAAACACAACCATGTGAATGTGCAAAGAATAAGCCAATAGATTCACAAGTGATCAGAACTGTACACTATCTGTGAAAAGACTGAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103997 True 2903 lncRNA 0.41 1 2083177 2086079

Neighbor

gene id symbol gene type direction distance location
AMCG00021072 zc4h2,LOC107557113,LOC107597258,LOC107663226,LOC107672730 coding downstream 25792 2049196 ~ 2057385 (-)
AMCG00021068 NA coding downstream 109069 1973785 ~ 1974108 (-)
AMCG00021069 NA coding downstream 109640 1969250 ~ 1973537 (-)
AMCG00021065 LOC106603315 coding downstream 130301 1931558 ~ 1952876 (-)
AMCG00021067 NA coding downstream 155319 1926713 ~ 1927858 (-)
AMCG00021075 NA coding upstream 547 2086626 ~ 2106886 (-)
AMCG00021078 NA coding upstream 71570 2157649 ~ 2176534 (-)
AMCG00021077 NA coding upstream 144429 2230508 ~ 2245691 (-)
AMCG00021082 NA coding upstream 316095 2402174 ~ 2412334 (-)
AMCG00021085 NA coding upstream 436781 2522860 ~ 2576954 (-)
G83342 zc3h12b non-coding downstream 3163 2079669 ~ 2080014 (-)
G83294 NA non-coding downstream 217950 1854882 ~ 1865227 (-)
G83205 NA non-coding downstream 1156613 922859 ~ 926564 (-)
G83091 NA non-coding downstream 1998050 84874 ~ 85127 (-)
G83081 NA non-coding downstream 2046286 36247 ~ 36891 (-)
G83346 NA non-coding upstream 18985 2105064 ~ 2106398 (-)
G83352 msn,LOC106567791,LOC102776036 non-coding upstream 54211 2140290 ~ 2141743 (-)
G83355 NA non-coding upstream 58325 2144404 ~ 2147117 (-)
G83371 NA non-coding upstream 104547 2190626 ~ 2190909 (-)
G83422 NA non-coding upstream 267908 2353987 ~ 2354694 (-)
G83313 NA other downstream 105209 1973160 ~ 1977968 (-)
G83428 NA other upstream 370922 2457001 ~ 2459379 (-)
AMCG00021090 NA other upstream 591506 2677585 ~ 2718919 (-)
G83761 NA other upstream 2617176 4703255 ~ 4751235 (-)
G83864 NA other upstream 4458413 6544492 ~ 6546577 (-)
AMCG00021153 NA other upstream 5029341 7115420 ~ 7122491 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location