G83442


Basic Information

Item Value
gene id G83442
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2515490 ~ 2517126 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU104124
TTTGCCACACAGTTGAAATTTTAATTCAAACCGCAGTGAGCAGCACTGAAGGCTGAAGACACTTGGTCCTCCTCCTGCCAATAACTCTAGCgcattattaataaacattaaaccAAAGCAATTAGCGTGTTTCTGTGCTCCTCAGACACGCTGTGGGCCTCCAGGCGCTCGGCTTTAATGAGTAACGCtttccacagacacacaggtattatttgacagtgtttaatcaaatgcaaagaaacaggtacacaaacaaaaccaatcGTGTGAACTCAGGACTACAGTACACATCTAATCAGGTCAGAACAACTGACGATGGACACGGTCAATTTACAGGTTTTTGAAAAGGGGTGTGTAACGAGAAACTCTACAGTTGTACACATTTTTGCATGAAAGTATctaaacacacatgtaaaaaaGTGCAGGGACAGTCATTGTAGCGAAGTAGGTAGCACATTTGATAGCCAGGTTTCCCcgtggttttaaaaacaacatgtatgTAAGTTTTTACAACCAATACAAGATAAAGAACCTATCGTGAAAGAATGACGTATCCAATAATTGTCTTCATGGTCTGAGTTCCTGTAAAAGTCTTAAAACcagcttttctcctttttttcacACTTGCTTTGAAGTAATAATTGAATTTATAACATACAAAAGCCTTCATTGTATCTTTATGAAGGAGTCCTTTTCTGTCAGCAATATATAAGATAAAAACATCCTATCTACCTCTAtaggttttgaaaaatgttttcctgctTTCAGATCATGTAACCAATTTATTATAGGATCTAGAGAAAAGTTATGAAACAggacagcattttattttgctcattTAACTCCACTAAAGAAAACTTTCTAAAGATACAGCAGTTTACAAagtcccatatatatatatatatatatatatatatatatatgtttctatatatatataaaagtaggTAGCAAACCGTATGAAACTTTATTTACCAGTATAAAGCATTGACTTTAATGACAACATTACAATACCTATTATTTGTTAAGAGACAAATGTGTgcttatataataaaaaaaaattaaatgtcaaaaaatTCTACTTCATTCTAagttttattacagttaaaccATTTATTGCTacttgcagtttttttgtttttgtaaaggaTGTAGTTACTTTGAAGCCTCCTTTTGTGCCATCATGTAGTTTGATACAATATACATTACTGAGGAAAGAAGTAAATCTTGGGGGAGAAATTCATATTTGAATCCAACAAAAATATAGTTAGGCACGTCTCAGtctttgttaatgtatttgtttctcgTGCTTAAGAACATGTACATGGCACTGGATATAGCATTTCAGATCTCGCAACACTTGCCgaaatgcaacatttaaacaaagcCCCTTTCTTCACGATGACTGTGTAGTAGTGACTTTTCAGGGGAAATTAAGCCATTCGGATTAACAGAAAATGCTTTGCAATCATTTAAATTGACCTCCGATATTTAGCTGTAGAATCATATGAATCATGATAACTTAATATTTTGCAGTGctcttattattgttgttttttaaaaaatggGATTCCATCTTGAAAGATAGAAAAATGTTACAATCATAAAAGATGTATTGCTGTTTGTTGTATATCCtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104124 True 1637 lncRNA 0.33 1 2515490 2517126

Neighbor

gene id symbol gene type direction distance location
AMCG00021082 NA coding downstream 103156 2402174 ~ 2412334 (-)
AMCG00021077 NA coding downstream 269799 2230508 ~ 2245691 (-)
AMCG00021078 NA coding downstream 338956 2157649 ~ 2176534 (-)
AMCG00021075 NA coding downstream 408604 2086626 ~ 2106886 (-)
AMCG00021072 zc4h2,LOC107557113,LOC107597258,LOC107663226,LOC107672730 coding downstream 458105 2049196 ~ 2057385 (-)
AMCG00021085 NA coding upstream 5734 2522860 ~ 2576954 (-)
AMCG00021086 NA coding upstream 66204 2583330 ~ 2583617 (-)
AMCG00021091 LOC106603306 coding upstream 738253 3255379 ~ 3265211 (-)
AMCG00021092 efnb1,LOC106603306,LOC106567780 coding upstream 770868 3287994 ~ 3288740 (-)
AMCG00021105 NA coding upstream 1216630 3733756 ~ 3736353 (-)
G83441 NA non-coding downstream 3941 2511324 ~ 2511549 (-)
G83422 NA non-coding downstream 160796 2353987 ~ 2354694 (-)
G83371 NA non-coding downstream 324581 2190626 ~ 2190909 (-)
G83355 NA non-coding downstream 368373 2144404 ~ 2147117 (-)
G83352 msn,LOC106567791,LOC102776036 non-coding downstream 373747 2140290 ~ 2141743 (-)
G83465 NA non-coding upstream 83383 2600509 ~ 2602840 (-)
G83481 NA non-coding upstream 172844 2689970 ~ 2690210 (-)
G83499 NA non-coding upstream 424457 2941583 ~ 2954613 (-)
G83512 NA non-coding upstream 519171 3036297 ~ 3056152 (-)
G83517 NA non-coding upstream 570568 3087694 ~ 3087955 (-)
G83428 NA other downstream 56111 2457001 ~ 2459379 (-)
G83313 NA other downstream 537522 1973160 ~ 1977968 (-)
AMCG00021090 NA other upstream 160459 2677585 ~ 2718919 (-)
G83761 NA other upstream 2186129 4703255 ~ 4751235 (-)
G83864 NA other upstream 4027366 6544492 ~ 6546577 (-)
AMCG00021153 NA other upstream 4598294 7115420 ~ 7122491 (-)
AMCG00021249 NA other upstream 9576351 12093477 ~ 12100854 (-)

Expression


Co-expression Network