G83528


Basic Information

Item Value
gene id G83528
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 3353985 ~ 3354286 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU104226
actgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccgggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaacagactggataggatccttgatcacttagttattaatg

Function

GO: NA

KEGG:

id description
ko04919 Thyroid hormone signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU104226 True 302 lncRNA 0.46 1 3353985 3354286

Neighbor

gene id symbol gene type direction distance location
AMCG00021089 cunhxorf56,LOC107746415 coding upstream 607632 2719456 ~ 2746353 (+)
AMCG00021088 NA coding upstream 683210 2652713 ~ 2670775 (+)
AMCG00021087 yipf6,LOC106603310,LOC107596694,LOC107746343 coding upstream 756277 2588168 ~ 2597708 (+)
AMCG00021083 ar,LOC107757532 coding upstream 841778 2506216 ~ 2512207 (+)
AMCG00021084 NA coding upstream 873953 2457929 ~ 2480032 (+)
AMCG00021093 NA coding downstream 111474 3465760 ~ 3471536 (+)
AMCG00021095 NA coding downstream 229618 3583904 ~ 3587462 (+)
AMCG00021097 eda,LOC107700911,LOC107746346,LOC107757537 coding downstream 314772 3669058 ~ 3672076 (+)
AMCG00021096 eda,LOC106567777 coding downstream 319530 3673816 ~ 3674034 (+)
AMCG00021098 NA coding downstream 320793 3675079 ~ 3676379 (+)
G83516 NA non-coding upstream 266076 3087694 ~ 3087909 (+)
G83497 NA non-coding upstream 416300 2937485 ~ 2937685 (+)
G83493 NA non-coding upstream 588981 2764793 ~ 2765004 (+)
G83459 NA non-coding upstream 746315 2607269 ~ 2607670 (+)
G83443 NA non-coding upstream 828006 2522863 ~ 2525979 (+)
G83621 NA non-coding downstream 434741 3789027 ~ 3789246 (+)
G83622 NA non-coding downstream 440703 3794989 ~ 3795242 (+)
G83623 NA non-coding downstream 441058 3795344 ~ 3795611 (+)
G83645 NA non-coding downstream 581410 3935696 ~ 3935955 (+)
G83704 NA non-coding downstream 907715 4262001 ~ 4265982 (+)
AMCG00021076 NA other upstream 1123838 2209482 ~ 2230147 (+)
AMCG00021063 NA other upstream 1434619 1917488 ~ 1919366 (+)
AMCG00021049 NA other upstream 2427510 918006 ~ 926475 (+)
G83624 NA other downstream 443555 3797841 ~ 3798783 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other downstream 772784 4127070 ~ 4129373 (+)
AMCG00021114 NA other downstream 848425 4202711 ~ 4233797 (+)
AMCG00021133 NA other downstream 3189948 6544234 ~ 6546601 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 3757711 7111997 ~ 7121237 (+)

Expression


Co-expression Network